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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:53.3 nTPM
HPA:53.3 nTPM
GTEx:62.3 nTPM
FANTOM5:109.2 Scaled Tags Per Million
Pig:20.1 nTPM
Mouse:69.4 nTPM
Allen mouse:3.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA007199
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.1
2288 Male, age 75, left hemisphere 48.4
1781 Male, age 74, unknown 48.3
1857 Female, age 85, left hemisphere 47.0
2290 Female, age 72, unknown 46.8
2481 Female, age 94, left hemisphere 45.8
1854 Male, age 80, left hemisphere 45.5
2846 Female, age 79, unknown 43.8
2289 Male, age 61, right hemisphere 42.9
Claustrum
nTPM: 45.7
2491 Male, age 75, both hemispheres 49.3
2284 Female, age 91, both hemispheres 48.9
2392 Female, age 94, both hemispheres 48.6
2198 Male, age 80, both hemispheres 48.5
2568 Male, age 61, both hemispheres 47.0
2196 Female, age 79, unknown 43.4
1956 Male, age 74, unknown 42.1
2292 Female, age 85, both hemispheres 41.7
2645 Female, age 72, unknown 41.5
Globus pallidus, externus
nTPM: 41.0
2772 Female, age 79, unknown 44.7
1996 Male, age 80, right hemisphere 41.8
2395 Male, age 75, both hemispheres 41.6
2646 Male, age 61, right hemisphere 39.1
2567 Female, age 72, unknown 37.9
Globus pallidus, internus
nTPM: 41.6
2287 Male, age 75, right hemisphere 48.7
2483 Female, age 94, right hemisphere 44.0
2778 Female, age 91, both hemispheres 41.5
2037 Male, age 80, right hemisphere 40.5
1818 Male, age 74, unknown 39.8
2566 Female, age 72, unknown 39.0
2111 Female, age 85, right hemisphere 37.8
Nucleus accumbens
nTPM: 47.1
1783 Male, age 74, unknown 51.4
1856 Female, age 91, right hemisphere 51.3
2824 Male, age 61, right hemisphere 50.9
1806 Female, age 85, left hemisphere 49.8
2286 Male, age 75, left hemisphere 48.1
2732 Male, age 80, right hemisphere 43.1
2698 Female, age 72, unknown 41.7
2391 Female, age 94, left hemisphere 40.4
Nucleus basalis of Meynert
nTPM: 42.3
2484 Female, age 94, left hemisphere 45.4
2821 Male, age 75, both hemispheres 42.6
2393 Male, age 80, right hemisphere 42.4
2569 Male, age 61, both hemispheres 38.9
Nucleus of the diagonal band
nTPM: 53.3
2029 Male, age 61, right hemisphere 56.8
1812 Female, age 91, both hemispheres 53.1
2775 Male, age 80, right hemisphere 52.6
2195 Female, age 85, both hemispheres 52.2
1979 Male, age 74, unknown 51.6
Olfactory tubercle
nTPM: 51.7
1998 Female, age 91, both hemispheres 56.6
2487 Female, age 94, left hemisphere 53.9
1846 Male, age 80, right hemisphere 49.5
2856 Male, age 75, right hemisphere 46.7
Putamen
nTPM: 45.5
1838 Male, age 80, right hemisphere 50.7
2466 Female, age 79, unknown 50.3
1937 Female, age 91, right hemisphere 49.8
1829 Male, age 74, unknown 44.0
2647 Male, age 75, left hemisphere 41.5
2482 Female, age 94, left hemisphere 41.1
2489 Female, age 72, unknown 41.1
Septal nuclei
nTPM: 51.2
2031 Female, age 72, unknown 61.5
1960 Male, age 74, unknown 58.5
2009 Female, age 91, both hemispheres 54.7
2059 Female, age 85, both hemispheres 49.5
2394 Male, age 61, left hemisphere 47.3
2629 Female, age 94, right hemisphere 43.8
2199 Male, age 80, right hemisphere 42.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.0
Samples: 246

Max nTPM: 86.9
Min nTPM: 19.4
Std nTPM: 11.2
Median nTPM: 51.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 86.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 85.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 84.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 84.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 81.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 80.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 80.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 78.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 78.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 74.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 73.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 62.3
Samples: 246

Max nTPM: 143.1
Min nTPM: 15.5
Std nTPM: 17.5
Median nTPM: 60.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 143.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 114.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 114.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 108.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 104.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 102.2
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 100.1
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 100.1
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 100.0
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 99.6
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 99.2
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Brain - Putamen (basal ganglia)
Average nTPM: 54.6
Samples: 205

Max nTPM: 92.4
Min nTPM: 24.6
Std nTPM: 12.5
Median nTPM: 54.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 92.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 86.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 84.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 81.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 79.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 79.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 77.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 77.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 77.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 75.3
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 74.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 89.1
FF:10164-103B2 76 years, female 89.1
Globus pallidus
Scaled Tags Per Million: 54.0
FF:10175-103C4 60 years, female 59.2
FF:10161-103A8 76 years, female 48.9
Nucleus accumbens
Scaled Tags Per Million: 82.1
FF:10037-101F1 23-56 years, mixed 82.1
Putamen
Scaled Tags Per Million: 109.2
FF:10176-103C5 60 years, female 109.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.1
Pig sample Sample description nTPM
Caudate
nTPM: 17.6
Samples: 4

Max nTPM: 21.6
Min nTPM: 14.3
Sample A Female 15.3
Sample B Female 21.6
Sample C Male 19.1
Sample D Male 14.3
Putamen
nTPM: 15.0
Samples: 4

Max nTPM: 20.2
Min nTPM: 11.2
Sample A Female 11.2
Sample B Female 14.9
Sample C Male 20.2
Sample D Male 13.6
Septum
nTPM: 20.1
Samples: 4

Max nTPM: 31.5
Min nTPM: 15.8
Sample A Female 16.5
Sample B Female 16.7
Sample C Male 31.5
Sample D Male 15.8
Ventral pallidum
nTPM: 16.0
Samples: 4

Max nTPM: 20.1
Min nTPM: 13.5
Sample A Female 15.2
Sample B Female 15.0
Sample C Male 20.1
Sample D Male 13.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 69.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.5
Samples: 4

Max nTPM: 63.9
Min nTPM: 45.7
Sample A Male 54.9
Sample B Male 63.9
Sample C Female 45.7
Sample D Female 49.5
Septum
nTPM: 69.4
Samples: 4

Max nTPM: 76.0
Min nTPM: 63.1
Sample A Male 69.9
Sample B Male 76.0
Sample C Female 68.6
Sample D Female 63.1
Ventral forebrain
nTPM: 63.5
Samples: 4

Max nTPM: 68.7
Min nTPM: 57.3
Sample A Male 67.3
Sample B Male 57.3
Sample C Female 68.7
Sample D Female 60.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
69443130 Antisense, RP_050414_03_E03, Mouse strain C57BL/6J (56 days, male) 3.2
Pallidum
Expression energy: 3.5
69443130 Antisense, RP_050414_03_E03, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.