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CYC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:96.9 nTPM
HPA:96.9 nTPM
GTEx:99.7 nTPM
FANTOM5:42.6 Scaled Tags Per Million
Pig:118.7 nTPM
Mouse:167.8 nTPM
Allen mouse:13.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 96.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.4
2019 Male, age 18, unknown 107.8
2586 Male, age 75, left hemisphere 98.3
2411 Female, age 72, unknown 96.4
1827 Male, age 72, unknown 95.1
2828 Female, age 72, unknown 91.9
2219 Male, age 76, both hemispheres 90.6
1833 Male, age 53, unknown 87.9
1830 Male, age 51, unknown 86.0
1870 Female, age 42, unknown 85.7
2666 Male, age 74, left hemisphere 84.3
Dorsal raphe nucleus
nTPM: 91.5
2298 Female, age 72, unknown 98.9
1828 Male, age 53, unknown 96.4
2047 Male, age 72, unknown 92.3
2750 Male, age 76, both hemispheres 86.4
2016 Female, age 72, unknown 83.7
Inferior colliculus
nTPM: 93.1
2097 Female, age 72, unknown 100.5
1890 Male, age 53, unknown 95.4
1848 Female, age 42, unknown 91.3
2849 Male, age 72, unknown 85.0
Median raphe nucleus
nTPM: 83.9
2220 Male, age 76, midline 83.9
Pedunculopontine tegmental nucleus
nTPM: 88.0
1921 Female, age 85, both hemispheres 92.6
2334 Male, age 80, both hemispheres 90.8
2338 Male, age 61, both hemispheres 80.6
Periaquaductal grey, anterior
nTPM: 90.1
1947 Male, age 18, unknown 90.5
1795 Male, age 51, unknown 90.3
2502 Female, age 75, unknown 89.5
Periaquaductal grey, dorsal
nTPM: 83.0
2464 Female, age 72, unknown 85.4
1831 Male, age 72, unknown 83.0
1840 Male, age 53, unknown 82.5
2850 Male, age 76, both hemispheres 81.3
Periaquaductal grey, lateral
nTPM: 84.8
2272 Male, age 74, both hemispheres 90.6
2053 Male, age 18, unknown 82.1
2140 Male, age 76, both hemispheres 81.8
Pretectal area
nTPM: 95.9
2007 Male, age 72, unknown 112.1
1817 Female, age 42, unknown 109.2
1816 Male, age 51, unknown 104.4
1944 Female, age 72, unknown 102.5
2667 Female, age 75, unknown 102.3
1815 Male, age 53, unknown 97.0
2273 Male, age 74, both hemispheres 93.0
2224 Female, age 72, unknown 86.4
2316 Male, age 76, right hemisphere 83.4
2407 Male, age 75, both hemispheres 83.2
2825 Male, age 18, unknown 81.5
Red nucleus
nTPM: 94.8
2785 Male, age 18, unknown 103.5
1821 Female, age 72, unknown 102.2
2503 Female, age 72, unknown 101.2
2725 Female, age 75, unknown 96.0
1954 Female, age 42, unknown 94.2
2769 Male, age 72, unknown 94.0
1865 Male, age 51, unknown 93.3
1904 Male, age 53, unknown 92.8
2588 Male, age 74, left hemisphere 92.6
2227 Male, age 72, unknown 92.4
2823 Male, age 76, right hemisphere 91.3
2584 Male, age 75, left hemisphere 83.5
Substantia nigra
nTPM: 96.9
1916 Female, age 42, unknown 116.4
1889 Female, age 72, unknown 104.3
1851 Male, age 51, unknown 102.7
1941 Male, age 53, unknown 101.4
2665 Male, age 74, both hemispheres 95.2
2583 Male, age 75, right hemisphere 91.2
2699 Male, age 18, unknown 91.0
2241 Male, age 72, unknown 90.5
2409 Female, age 72, unknown 89.8
2590 Female, age 75, unknown 86.7
Superior colliculus
nTPM: 89.7
2087 Female, age 72, unknown 97.2
1796 Male, age 53, unknown 94.1
2668 Female, age 75, unknown 91.5
1895 Male, age 76, right hemisphere 91.0
2261 Male, age 18, unknown 90.7
2587 Male, age 74, left hemisphere 88.2
1995 Male, age 72, unknown 87.8
1839 Male, age 51, unknown 87.4
1913 Female, age 42, unknown 86.0
2664 Male, age 75, both hemispheres 83.3
Ventral tegmental area
nTPM: 93.6
2410 Female, age 72, unknown 110.1
1915 Female, age 42, unknown 100.5
2218 Male, age 76, both hemispheres 95.0
1942 Male, age 51, unknown 88.3
2223 Female, age 72, unknown 86.0
2021 Male, age 53, unknown 81.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 99.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.7
Samples: 139

Max nTPM: 170.0
Min nTPM: 41.9
Std nTPM: 24.9
Median nTPM: 98.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 170.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 169.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 160.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 153.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 150.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 147.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 144.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 143.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 142.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 141.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 141.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.6
FF:10158-103A5 76 years, female 42.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 118.7
Pig sample Sample description nTPM
Midbrain
nTPM: 104.6
Samples: 4

Max nTPM: 122.1
Min nTPM: 84.2
Sample A Female 99.2
Sample B Female 84.2
Sample C Male 122.1
Sample D Male 112.8
Periaqueductal gray
nTPM: 77.4
Samples: 3

Max nTPM: 89.6
Min nTPM: 67.4
Sample B Female 75.1
Sample C Male 89.6
Sample D Male 67.4
Substantia nigra
nTPM: 94.8
Samples: 4

Max nTPM: 133.7
Min nTPM: 71.5
Sample A Female 133.7
Sample B Female 71.5
Sample C Male 99.6
Sample D Male 74.5
Superior colliculi
nTPM: 118.7
Samples: 4

Max nTPM: 153.5
Min nTPM: 79.3
Sample A Female 153.5
Sample B Female 79.3
Sample C Male 135.9
Sample D Male 106.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 167.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 167.8
Samples: 4

Max nTPM: 176.5
Min nTPM: 157.2
Sample A Male 175.9
Sample B Male 157.2
Sample C Female 161.6
Sample D Female 176.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.8
357103 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 13.8
323186 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 12.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.