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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:97.2 nTPM
HPA:97.2 nTPM
GTEx:108.9 nTPM
FANTOM5:71.5 Scaled Tags Per Million
Pig:89.2 nTPM
Mouse:191.5 nTPM
Allen mouse:13.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001247
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 97.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 92.2
2481 Female, age 94, left hemisphere 97.8
2288 Male, age 75, left hemisphere 93.5
1857 Female, age 85, left hemisphere 92.8
1781 Male, age 74, unknown 92.7
2290 Female, age 72, unknown 92.4
1854 Male, age 80, left hemisphere 90.5
2846 Female, age 79, unknown 90.1
2289 Male, age 61, right hemisphere 87.9
Claustrum
nTPM: 84.5
2198 Male, age 80, both hemispheres 93.5
2491 Male, age 75, both hemispheres 89.1
1956 Male, age 74, unknown 86.4
2284 Female, age 91, both hemispheres 85.5
2568 Male, age 61, both hemispheres 85.0
2196 Female, age 79, unknown 83.6
2292 Female, age 85, both hemispheres 80.1
2392 Female, age 94, both hemispheres 79.4
2645 Female, age 72, unknown 77.7
Globus pallidus, externus
nTPM: 97.1
2772 Female, age 79, unknown 110.6
1996 Male, age 80, right hemisphere 102.7
2646 Male, age 61, right hemisphere 97.0
2395 Male, age 75, both hemispheres 94.3
2567 Female, age 72, unknown 80.8
Globus pallidus, internus
nTPM: 97.2
2287 Male, age 75, right hemisphere 109.7
2483 Female, age 94, right hemisphere 104.7
2037 Male, age 80, right hemisphere 100.8
2778 Female, age 91, both hemispheres 99.7
1818 Male, age 74, unknown 98.7
2111 Female, age 85, right hemisphere 84.4
2566 Female, age 72, unknown 82.4
Nucleus accumbens
nTPM: 91.2
2286 Male, age 75, left hemisphere 97.3
1856 Female, age 91, right hemisphere 96.0
1783 Male, age 74, unknown 95.3
1806 Female, age 85, left hemisphere 94.1
2698 Female, age 72, unknown 87.9
2824 Male, age 61, right hemisphere 87.9
2732 Male, age 80, right hemisphere 85.9
2391 Female, age 94, left hemisphere 85.2
Nucleus basalis of Meynert
nTPM: 89.6
2569 Male, age 61, both hemispheres 98.1
2484 Female, age 94, left hemisphere 90.9
2393 Male, age 80, right hemisphere 86.1
2821 Male, age 75, both hemispheres 83.3
Nucleus of the diagonal band
nTPM: 90.1
1812 Female, age 91, both hemispheres 94.7
2775 Male, age 80, right hemisphere 94.4
2029 Male, age 61, right hemisphere 88.8
2195 Female, age 85, both hemispheres 87.7
1979 Male, age 74, unknown 85.0
Olfactory tubercle
nTPM: 89.1
1998 Female, age 91, both hemispheres 94.5
1846 Male, age 80, right hemisphere 90.3
2487 Female, age 94, left hemisphere 86.4
2856 Male, age 75, right hemisphere 85.0
Putamen
nTPM: 88.9
2466 Female, age 79, unknown 95.3
2482 Female, age 94, left hemisphere 92.8
1838 Male, age 80, right hemisphere 91.9
1937 Female, age 91, right hemisphere 91.8
2647 Male, age 75, left hemisphere 86.4
1829 Male, age 74, unknown 84.8
2489 Female, age 72, unknown 79.5
Septal nuclei
nTPM: 88.3
1960 Male, age 74, unknown 99.8
2031 Female, age 72, unknown 96.8
2009 Female, age 91, both hemispheres 88.9
2059 Female, age 85, both hemispheres 87.2
2394 Male, age 61, left hemisphere 82.9
2629 Female, age 94, right hemisphere 81.7
2199 Male, age 80, right hemisphere 81.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 108.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 100.3
Samples: 246

Max nTPM: 196.5
Min nTPM: 54.9
Std nTPM: 21.0
Median nTPM: 99.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 196.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 177.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 168.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 166.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 149.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 145.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 145.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 145.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 145.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 145.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 139.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 102.1
Samples: 246

Max nTPM: 172.6
Min nTPM: 53.3
Std nTPM: 19.5
Median nTPM: 102.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 172.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 163.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 158.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 156.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 153.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 151.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 151.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 147.9
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 142.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 142.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 140.6
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Brain - Putamen (basal ganglia)
Average nTPM: 108.9
Samples: 205

Max nTPM: 178.2
Min nTPM: 59.2
Std nTPM: 18.9
Median nTPM: 108.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 178.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 165.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 153.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 152.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 148.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 147.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 146.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 144.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 143.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 140.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 138.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 50.7
FF:10164-103B2 76 years, female 50.7
Globus pallidus
Scaled Tags Per Million: 44.9
FF:10161-103A8 76 years, female 48.0
FF:10175-103C4 60 years, female 41.8
Nucleus accumbens
Scaled Tags Per Million: 57.4
FF:10037-101F1 23-56 years, mixed 57.4
Putamen
Scaled Tags Per Million: 71.5
FF:10176-103C5 60 years, female 71.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 89.2
Pig sample Sample description nTPM
Caudate
nTPM: 81.3
Samples: 4

Max nTPM: 98.0
Min nTPM: 65.6
Sample A Female 65.6
Sample B Female 88.8
Sample C Male 98.0
Sample D Male 72.6
Putamen
nTPM: 89.2
Samples: 4

Max nTPM: 119.5
Min nTPM: 71.0
Sample A Female 81.9
Sample B Female 71.0
Sample C Male 119.5
Sample D Male 84.5
Septum
nTPM: 73.3
Samples: 4

Max nTPM: 79.6
Min nTPM: 67.1
Sample A Female 74.7
Sample B Female 71.6
Sample C Male 79.6
Sample D Male 67.1
Ventral pallidum
nTPM: 78.7
Samples: 4

Max nTPM: 95.4
Min nTPM: 62.8
Sample A Female 62.8
Sample B Female 87.2
Sample C Male 95.4
Sample D Male 69.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 191.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 147.9
Samples: 4

Max nTPM: 150.7
Min nTPM: 144.8
Sample A Male 146.0
Sample B Male 150.2
Sample C Female 144.8
Sample D Female 150.7
Septum
nTPM: 176.4
Samples: 4

Max nTPM: 190.0
Min nTPM: 159.2
Sample A Male 168.1
Sample B Male 190.0
Sample C Female 188.1
Sample D Female 159.2
Ventral forebrain
nTPM: 191.4
Samples: 4

Max nTPM: 212.2
Min nTPM: 179.3
Sample A Male 181.2
Sample B Male 179.3
Sample C Female 212.2
Sample D Female 193.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.1
323186 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 13.1
357103 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 9.4
Pallidum
Expression energy: 13.7
323186 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 13.7
357103 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 10.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.