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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:92.3 nTPM
HPA:92.3 nTPM
GTEx:90.4 nTPM
FANTOM5:47.3 Scaled Tags Per Million
Pig:88.7 nTPM
Mouse:169.8 nTPM
Allen mouse:19.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001247
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 92.3
Sample id Sample description nTPM
Hippocampus
nTPM: 89.3
1898 Male, age 80, left hemisphere 101.3
2148 Female, age 91, left hemisphere 89.1
2621 Female, age 67, right hemisphere 87.6
2529 Female, age 94, left hemisphere 87.0
1855 Male, age 76, left hemisphere 86.9
1911 Female, age 85, right hemisphere 83.6
Dentate gyrus
nTPM: 89.0
2530 Female, age 94, left hemisphere 96.0
2528 Male, age 74, both hemispheres 93.2
1927 Female, age 91, both hemispheres 91.7
2010 Male, age 76, both hemispheres 89.6
2246 Female, age 85, both hemispheres 84.2
2531 Female, age 67, both hemispheres 79.6
Entorhinal gyrus
nTPM: 88.3
2764 Male, age 80, right hemisphere 97.0
2117 Female, age 91, right hemisphere 90.1
2613 Female, age 94, left hemisphere 88.4
1938 Female, age 85, left hemisphere 87.4
1787 Male, age 76, left hemisphere 86.7
2686 Male, age 75, right hemisphere 79.7
Hippocampus, CA1
nTPM: 92.3
2749 Male, age 80, left hemisphere 115.1
2527 Male, age 74, both hemispheres 93.3
1873 Female, age 85, both hemispheres 87.9
2045 Male, age 76, both hemispheres 83.7
2082 Female, age 91, right hemisphere 81.3
Hippocampus, CA2
nTPM: 91.9
1963 Male, age 80, left hemisphere 98.6
2249 Male, age 74, both hemispheres 97.5
1892 Male, age 76, both hemispheres 95.5
2437 Female, age 94, left hemisphere 91.9
2113 Female, age 91, right hemisphere 85.0
1940 Female, age 85, left hemisphere 82.9
Hippocampus, CA3
nTPM: 92.2
2436 Male, age 74, both hemispheres 105.5
2137 Male, age 80, left hemisphere 97.4
1867 Male, age 76, both hemispheres 91.1
2620 Female, age 94, left hemisphere 87.9
1891 Female, age 85, both hemispheres 87.1
2861 Female, age 67, both hemispheres 84.1
Parahippocampal cortex
nTPM: 86.4
2250 Female, age 67, right hemisphere 91.8
1990 Female, age 91, right hemisphere 91.4
1850 Male, age 80, both hemispheres 89.9
2245 Female, age 91, both hemispheres 88.4
1933 Female, age 85, both hemispheres 87.3
2532 Female, age 72, left hemisphere 85.2
2692 Male, age 74, both hemispheres 83.9
2018 Male, age 76, both hemispheres 82.6
2693 Female, age 94, both hemispheres 82.3
2622 Female, age 67, right hemisphere 81.3
Perirhinal gyrus
nTPM: 89.5
1847 Female, age 91, left hemisphere 97.6
1794 Male, age 80, right hemisphere 94.6
1841 Female, age 85, right hemisphere 86.8
2521 Female, age 94, right hemisphere 86.6
2848 Male, age 76, right hemisphere 81.8
Subiculum
nTPM: 89.9
2438 Female, age 94, left hemisphere 95.5
1901 Male, age 80, both hemispheres 93.2
1977 Female, age 85, both hemispheres 91.5
2619 Male, age 74, both hemispheres 89.0
2729 Female, age 91, right hemisphere 86.2
2042 Male, age 76, both hemispheres 83.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 90.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 90.4
Samples: 197

Max nTPM: 165.1
Min nTPM: 45.1
Std nTPM: 20.1
Median nTPM: 89.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 165.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 144.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 143.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 136.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 136.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 134.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 131.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 130.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 126.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 124.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 122.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.3
FF:10169-103B7 60 years, female 52.3
FF:10153-102I9 76 years, female 42.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 88.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 88.7
Samples: 4

Max nTPM: 118.8
Min nTPM: 64.0
Sample A Female 118.8
Sample B Female 83.8
Sample C Male 88.2
Sample D Male 64.0
Entorhinal cortex
nTPM: 78.4
Samples: 4

Max nTPM: 89.2
Min nTPM: 62.9
Sample A Female 87.6
Sample B Female 89.2
Sample C Male 73.8
Sample D Male 62.9
Subiculum
nTPM: 72.2
Samples: 4

Max nTPM: 96.0
Min nTPM: 62.1
Sample A Female 96.0
Sample B Female 62.9
Sample C Male 67.6
Sample D Male 62.1
Ventral hippocampus
nTPM: 87.2
Samples: 4

Max nTPM: 107.3
Min nTPM: 54.6
Sample A Female 100.8
Sample B Female 54.6
Sample C Male 107.3
Sample D Male 85.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 169.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 163.0
Samples: 4

Max nTPM: 177.1
Min nTPM: 152.1
Sample A Male 152.1
Sample B Male 160.9
Sample C Female 177.1
Sample D Female 161.9
Hippocampal formation
nTPM: 169.8
Samples: 4

Max nTPM: 185.8
Min nTPM: 151.9
Sample A Male 185.8
Sample B Male 151.9
Sample C Female 162.9
Sample D Female 178.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 19.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 19.6
323186 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 19.6
357103 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 15.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.