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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:3.0 nTPM
HPA:3.0 nTPM
GTEx:7.3 nTPM
FANTOM5:7.4 Scaled Tags Per Million
Pig:0.8 nTPM
Mouse:11.6 nTPM
Allen mouse:1.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA061003Antibody CAB002522Antibody CAB072340
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.0
1854 Male, age 80, left hemisphere 5.6
2289 Male, age 61, right hemisphere 5.5
2290 Female, age 72, unknown 5.4
1781 Male, age 74, unknown 2.5
1857 Female, age 85, left hemisphere 2.5
2481 Female, age 94, left hemisphere 1.4
2288 Male, age 75, left hemisphere 0.8
2846 Female, age 79, unknown 0.6
Claustrum
nTPM: 0.8
2196 Female, age 79, unknown 1.8
2645 Female, age 72, unknown 1.3
2568 Male, age 61, both hemispheres 1.2
2284 Female, age 91, both hemispheres 0.6
2392 Female, age 94, both hemispheres 0.6
2491 Male, age 75, both hemispheres 0.5
1956 Male, age 74, unknown 0.4
2292 Female, age 85, both hemispheres 0.4
2198 Male, age 80, both hemispheres 0.3
Globus pallidus, externus
nTPM: 0.7
2646 Male, age 61, right hemisphere 2.4
2772 Female, age 79, unknown 0.6
2395 Male, age 75, both hemispheres 0.3
2567 Female, age 72, unknown 0.3
1996 Male, age 80, right hemisphere 0.1
Globus pallidus, internus
nTPM: 0.2
2483 Female, age 94, right hemisphere 0.8
2778 Female, age 91, both hemispheres 0.2
1818 Male, age 74, unknown 0.1
2037 Male, age 80, right hemisphere 0.1
2111 Female, age 85, right hemisphere 0.1
2287 Male, age 75, right hemisphere 0.1
2566 Female, age 72, unknown 0.1
Nucleus accumbens
nTPM: 1.8
1806 Female, age 85, left hemisphere 4.2
1783 Male, age 74, unknown 2.6
1856 Female, age 91, right hemisphere 2.4
2824 Male, age 61, right hemisphere 1.9
2698 Female, age 72, unknown 1.7
2286 Male, age 75, left hemisphere 1.1
2391 Female, age 94, left hemisphere 0.6
2732 Male, age 80, right hemisphere 0.5
Nucleus basalis of Meynert
nTPM: 1.3
2484 Female, age 94, left hemisphere 2.4
2569 Male, age 61, both hemispheres 1.6
2393 Male, age 80, right hemisphere 0.5
2821 Male, age 75, both hemispheres 0.5
Nucleus of the diagonal band
nTPM: 0.5
1812 Female, age 91, both hemispheres 0.9
1979 Male, age 74, unknown 0.4
2195 Female, age 85, both hemispheres 0.4
2775 Male, age 80, right hemisphere 0.4
2029 Male, age 61, right hemisphere 0.2
Olfactory tubercle
nTPM: 0.4
1998 Female, age 91, both hemispheres 0.5
2487 Female, age 94, left hemisphere 0.5
1846 Male, age 80, right hemisphere 0.3
2856 Male, age 75, right hemisphere 0.3
Putamen
nTPM: 0.7
1838 Male, age 80, right hemisphere 1.6
1937 Female, age 91, right hemisphere 1.6
1829 Male, age 74, unknown 1.2
2466 Female, age 79, unknown 0.3
2482 Female, age 94, left hemisphere 0.2
2647 Male, age 75, left hemisphere 0.2
2489 Female, age 72, unknown 0.1
Septal nuclei
nTPM: 0.3
2009 Female, age 91, both hemispheres 0.4
2031 Female, age 72, unknown 0.4
2059 Female, age 85, both hemispheres 0.4
2629 Female, age 94, right hemisphere 0.3
1960 Male, age 74, unknown 0.2
2394 Male, age 61, left hemisphere 0.2
2199 Male, age 80, right hemisphere 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.3
Samples: 246

Max nTPM: 39.8
Min nTPM: 0.0
Std nTPM: 6.4
Median nTPM: 4.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 39.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 32.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 28.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 27.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 26.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 24.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 23.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 22.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 22.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 20.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 19.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.0
Samples: 246

Max nTPM: 18.3
Min nTPM: 0.0
Std nTPM: 3.1
Median nTPM: 3.3
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 18.3
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 18.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 17.4
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 12.5
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 12.4
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 12.2
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 12.0
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 11.9
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 11.2
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 11.0
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 10.9
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Brain - Putamen (basal ganglia)
Average nTPM: 1.4
Samples: 205

Max nTPM: 10.4
Min nTPM: 0.0
Std nTPM: 1.4
Median nTPM: 1.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 10.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 7.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 5.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 5.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 5.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 5.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 5.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 5.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 5.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 5.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 4.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.4
FF:10164-103B2 76 years, female 7.4
Globus pallidus
Scaled Tags Per Million: 0.5
FF:10175-103C4 60 years, female 0.7
FF:10161-103A8 76 years, female 0.3
Nucleus accumbens
Scaled Tags Per Million: 4.5
FF:10037-101F1 23-56 years, mixed 4.5
Putamen
Scaled Tags Per Million: 5.6
FF:10176-103C5 60 years, female 5.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.8
Pig sample Sample description nTPM
Caudate
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.2
Sample D Male 0.0
Putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.1
Sample A Female 0.5
Sample B Female 0.1
Sample C Male 0.3
Sample D Male 0.1
Septum
nTPM: 0.7
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 2.3
Sample D Male 0.2
Ventral pallidum
nTPM: 0.5
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 1.7
Sample D Male 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.9
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.5
Sample A Male 9.4
Sample B Male 10.2
Sample C Female 8.5
Sample D Female 11.3
Septum
nTPM: 5.9
Samples: 4

Max nTPM: 11.9
Min nTPM: 3.3
Sample A Male 11.9
Sample B Male 3.7
Sample C Female 3.3
Sample D Female 4.7
Ventral forebrain
nTPM: 11.6
Samples: 4

Max nTPM: 15.7
Min nTPM: 8.3
Sample A Male 15.7
Sample B Male 9.3
Sample C Female 8.3
Sample D Female 13.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
1058 Antisense, RP_Baylor_103073, Mouse strain C57BL/6J (56 days, male) 0.4
1056 Antisense, RP_Baylor_103073, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 1.0
1058 Antisense, RP_Baylor_103073, Mouse strain C57BL/6J (56 days, male) 1.0
1056 Antisense, RP_Baylor_103073, Mouse strain C57BL/6J (56 days, male) 0.6

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.