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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:192.4 nTPM
HPA:192.4 nTPM
GTEx:134.1 nTPM
FANTOM5:4.6 Scaled Tags Per Million
Pig:594.4 nTPM
Mouse:62.1 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 192.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.0
2219 Male, age 76, both hemispheres 103.9
1833 Male, age 53, unknown 42.2
2586 Male, age 75, left hemisphere 32.3
1830 Male, age 51, unknown 28.2
2411 Female, age 72, unknown 17.8
2019 Male, age 18, unknown 2.0
1870 Female, age 42, unknown 1.7
1827 Male, age 72, unknown 0.6
2666 Male, age 74, left hemisphere 0.5
2828 Female, age 72, unknown 0.5
Dorsal raphe nucleus
nTPM: 22.3
2016 Female, age 72, unknown 33.0
2047 Male, age 72, unknown 27.0
1828 Male, age 53, unknown 23.7
2298 Female, age 72, unknown 15.9
2750 Male, age 76, both hemispheres 11.8
Inferior colliculus
nTPM: 0.8
2849 Male, age 72, unknown 1.6
1848 Female, age 42, unknown 0.8
1890 Male, age 53, unknown 0.7
2097 Female, age 72, unknown 0.4
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Pedunculopontine tegmental nucleus
nTPM: 45.2
2334 Male, age 80, both hemispheres 133.2
1921 Female, age 85, both hemispheres 2.0
2338 Male, age 61, both hemispheres 0.4
Periaquaductal grey, anterior
nTPM: 0.8
2502 Female, age 75, unknown 1.9
1947 Male, age 18, unknown 0.6
1795 Male, age 51, unknown 0.1
Periaquaductal grey, dorsal
nTPM: 2.6
2464 Female, age 72, unknown 3.9
2850 Male, age 76, both hemispheres 3.4
1840 Male, age 53, unknown 2.7
1831 Male, age 72, unknown 0.6
Periaquaductal grey, lateral
nTPM: 3.0
2140 Male, age 76, both hemispheres 6.4
2272 Male, age 74, both hemispheres 2.1
2053 Male, age 18, unknown 0.4
Pretectal area
nTPM: 1.5
2224 Female, age 72, unknown 5.5
2825 Male, age 18, unknown 3.2
1944 Female, age 72, unknown 2.9
2667 Female, age 75, unknown 1.8
2273 Male, age 74, both hemispheres 1.4
2007 Male, age 72, unknown 0.6
1815 Male, age 53, unknown 0.2
1816 Male, age 51, unknown 0.1
1817 Female, age 42, unknown 0.1
2316 Male, age 76, right hemisphere 0.1
2407 Male, age 75, both hemispheres 0.1
Red nucleus
nTPM: 2.6
2584 Male, age 75, left hemisphere 18.2
2769 Male, age 72, unknown 2.7
2725 Female, age 75, unknown 2.6
2227 Male, age 72, unknown 2.5
1865 Male, age 51, unknown 1.7
2785 Male, age 18, unknown 1.2
1821 Female, age 72, unknown 1.1
2588 Male, age 74, left hemisphere 0.6
2503 Female, age 72, unknown 0.4
1904 Male, age 53, unknown 0.3
1954 Female, age 42, unknown 0.1
2823 Male, age 76, right hemisphere 0.1
Substantia nigra
nTPM: 192.4
1916 Female, age 42, unknown 455.6
2699 Male, age 18, unknown 432.2
2241 Male, age 72, unknown 367.4
1851 Male, age 51, unknown 175.0
1941 Male, age 53, unknown 173.0
2409 Female, age 72, unknown 117.9
2665 Male, age 74, both hemispheres 112.2
1889 Female, age 72, unknown 60.0
2583 Male, age 75, right hemisphere 18.7
2590 Female, age 75, unknown 12.2
Superior colliculus
nTPM: 0.8
2087 Female, age 72, unknown 3.0
2668 Female, age 75, unknown 2.1
2587 Male, age 74, left hemisphere 0.8
1995 Male, age 72, unknown 0.6
1796 Male, age 53, unknown 0.4
2261 Male, age 18, unknown 0.4
1839 Male, age 51, unknown 0.3
2664 Male, age 75, both hemispheres 0.2
1895 Male, age 76, right hemisphere 0.1
1913 Female, age 42, unknown 0.1
Ventral tegmental area
nTPM: 155.1
1915 Female, age 42, unknown 280.6
2218 Male, age 76, both hemispheres 210.3
2410 Female, age 72, unknown 200.3
1942 Male, age 51, unknown 142.2
2223 Female, age 72, unknown 54.9
2021 Male, age 53, unknown 42.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 134.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 134.1
Samples: 139

Max nTPM: 822.1
Min nTPM: 0.0
Std nTPM: 163.6
Median nTPM: 70.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 822.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 661.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 592.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 523.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 518.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 486.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 477.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 475.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 454.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 445.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 437.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.6
FF:10158-103A5 76 years, female 4.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 594.4
Pig sample Sample description nTPM
Midbrain
nTPM: 58.5
Samples: 4

Max nTPM: 232.2
Min nTPM: 0.4
Sample A Female 1.1
Sample B Female 232.2
Sample C Male 0.4
Sample D Male 0.4
Periaqueductal gray
nTPM: 18.7
Samples: 3

Max nTPM: 42.4
Min nTPM: 4.0
Sample B Female 4.0
Sample C Male 42.4
Sample D Male 9.8
Substantia nigra
nTPM: 594.4
Samples: 4

Max nTPM: 1069.0
Min nTPM: 5.6
Sample A Female 935.3
Sample B Female 367.5
Sample C Male 1069.0
Sample D Male 5.6
Superior colliculi
nTPM: 0.8
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.1
Sample A Female 1.4
Sample B Female 1.2
Sample C Male 0.1
Sample D Male 0.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.1
Samples: 4

Max nTPM: 64.2
Min nTPM: 59.3
Sample A Male 63.0
Sample B Male 59.3
Sample C Female 64.2
Sample D Female 61.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
1056 Antisense, RP_Baylor_103073, Mouse strain C57BL/6J (56 days, male) 1.8
1058 Antisense, RP_Baylor_103073, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.