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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.9 nTPM
HPA:67.9 nTPM
GTEx:51.7 nTPM
FANTOM5:310.9 Scaled Tags Per Million
Pig:29.3 nTPM
Mouse:59.8 nTPM
Allen mouse:11.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.0
2586 Male, age 75, left hemisphere 81.1
2411 Female, age 72, unknown 60.3
2019 Male, age 18, unknown 58.8
1830 Male, age 51, unknown 57.3
1833 Male, age 53, unknown 50.3
1870 Female, age 42, unknown 43.7
2828 Female, age 72, unknown 40.2
2666 Male, age 74, left hemisphere 36.9
1827 Male, age 72, unknown 27.6
2219 Male, age 76, both hemispheres 24.3
Dorsal raphe nucleus
nTPM: 22.4
2750 Male, age 76, both hemispheres 63.8
1828 Male, age 53, unknown 20.6
2016 Female, age 72, unknown 15.3
2047 Male, age 72, unknown 7.9
2298 Female, age 72, unknown 4.6
Inferior colliculus
nTPM: 18.8
1890 Male, age 53, unknown 22.0
2849 Male, age 72, unknown 19.6
1848 Female, age 42, unknown 18.1
2097 Female, age 72, unknown 15.6
Median raphe nucleus
nTPM: 12.3
2220 Male, age 76, midline 12.3
Pedunculopontine tegmental nucleus
nTPM: 30.8
2334 Male, age 80, both hemispheres 33.9
1921 Female, age 85, both hemispheres 32.8
2338 Male, age 61, both hemispheres 25.7
Periaquaductal grey, anterior
nTPM: 31.4
1947 Male, age 18, unknown 35.9
2502 Female, age 75, unknown 34.4
1795 Male, age 51, unknown 24.0
Periaquaductal grey, dorsal
nTPM: 9.0
2464 Female, age 72, unknown 32.3
1831 Male, age 72, unknown 3.9
1840 Male, age 53, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 12.7
2272 Male, age 74, both hemispheres 22.4
2053 Male, age 18, unknown 15.8
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 26.5
2316 Male, age 76, right hemisphere 61.1
2407 Male, age 75, both hemispheres 55.9
2007 Male, age 72, unknown 36.1
1815 Male, age 53, unknown 35.0
2825 Male, age 18, unknown 24.4
1817 Female, age 42, unknown 19.8
2667 Female, age 75, unknown 19.3
1816 Male, age 51, unknown 13.2
2224 Female, age 72, unknown 12.6
1944 Female, age 72, unknown 10.8
2273 Male, age 74, both hemispheres 2.8
Red nucleus
nTPM: 67.9
2823 Male, age 76, right hemisphere 91.3
1904 Male, age 53, unknown 80.2
2584 Male, age 75, left hemisphere 79.3
2785 Male, age 18, unknown 76.4
2769 Male, age 72, unknown 76.2
2227 Male, age 72, unknown 75.7
2588 Male, age 74, left hemisphere 73.7
1865 Male, age 51, unknown 69.9
2503 Female, age 72, unknown 63.5
1821 Female, age 72, unknown 47.2
1954 Female, age 42, unknown 40.8
2725 Female, age 75, unknown 40.3
Substantia nigra
nTPM: 26.9
2583 Male, age 75, right hemisphere 62.4
2590 Female, age 75, unknown 46.3
1851 Male, age 51, unknown 32.6
2409 Female, age 72, unknown 31.1
1889 Female, age 72, unknown 26.0
1941 Male, age 53, unknown 21.6
2699 Male, age 18, unknown 16.3
2665 Male, age 74, both hemispheres 14.2
2241 Male, age 72, unknown 10.7
1916 Female, age 42, unknown 8.2
Superior colliculus
nTPM: 40.6
1913 Female, age 42, unknown 72.0
1995 Male, age 72, unknown 65.0
1895 Male, age 76, right hemisphere 55.0
2668 Female, age 75, unknown 42.5
1839 Male, age 51, unknown 38.8
2664 Male, age 75, both hemispheres 32.3
2587 Male, age 74, left hemisphere 31.8
1796 Male, age 53, unknown 31.0
2261 Male, age 18, unknown 20.8
2087 Female, age 72, unknown 16.7
Ventral tegmental area
nTPM: 30.4
2223 Female, age 72, unknown 46.2
2410 Female, age 72, unknown 41.5
1942 Male, age 51, unknown 32.7
2021 Male, age 53, unknown 23.6
2218 Male, age 76, both hemispheres 21.9
1915 Female, age 42, unknown 16.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.7
Samples: 139

Max nTPM: 202.6
Min nTPM: 8.8
Std nTPM: 29.8
Median nTPM: 45.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 202.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 175.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 135.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 121.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 110.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 109.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 107.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 103.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 102.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 97.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 97.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 310.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 310.9
FF:10158-103A5 76 years, female 310.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.3
Pig sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 41.1
Min nTPM: 19.4
Sample A Female 41.1
Sample B Female 24.5
Sample C Male 28.2
Sample D Male 19.4
Periaqueductal gray
nTPM: 19.3
Samples: 3

Max nTPM: 21.7
Min nTPM: 17.8
Sample B Female 21.7
Sample C Male 18.3
Sample D Male 17.8
Substantia nigra
nTPM: 29.4
Samples: 4

Max nTPM: 37.8
Min nTPM: 22.9
Sample A Female 37.8
Sample B Female 22.9
Sample C Male 25.3
Sample D Male 31.4
Superior colliculi
nTPM: 22.9
Samples: 4

Max nTPM: 29.7
Min nTPM: 9.4
Sample A Female 29.7
Sample B Female 9.4
Sample C Male 26.3
Sample D Male 26.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.8
Samples: 4

Max nTPM: 66.1
Min nTPM: 51.9
Sample A Male 66.1
Sample B Male 51.9
Sample C Female 59.2
Sample D Female 61.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.2
71213880 Antisense, RP_050816_04_H10, Mouse strain C57BL/6J (56 days, male) 11.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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