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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.8 nTPM
HPA:39.8 nTPM
GTEx:29.9 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:46.0 nTPM
Mouse:140.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2411 Female, age 72, unknown 40.4
1870 Female, age 42, unknown 39.4
1833 Male, age 53, unknown 37.3
1830 Male, age 51, unknown 36.4
1827 Male, age 72, unknown 36.3
2019 Male, age 18, unknown 35.8
2666 Male, age 74, left hemisphere 35.5
2219 Male, age 76, both hemispheres 35.2
2828 Female, age 72, unknown 33.8
2586 Male, age 75, left hemisphere 28.4
Dorsal raphe nucleus
nTPM: 38.1
2750 Male, age 76, both hemispheres 39.5
2298 Female, age 72, unknown 39.4
2016 Female, age 72, unknown 37.6
2047 Male, age 72, unknown 37.1
1828 Male, age 53, unknown 36.8
Inferior colliculus
nTPM: 36.5
2097 Female, age 72, unknown 38.0
1848 Female, age 42, unknown 36.9
2849 Male, age 72, unknown 36.0
1890 Male, age 53, unknown 35.2
Median raphe nucleus
nTPM: 39.3
2220 Male, age 76, midline 39.3
Pedunculopontine tegmental nucleus
nTPM: 39.8
2338 Male, age 61, both hemispheres 42.4
2334 Male, age 80, both hemispheres 39.1
1921 Female, age 85, both hemispheres 37.9
Periaquaductal grey, anterior
nTPM: 36.4
2502 Female, age 75, unknown 38.1
1947 Male, age 18, unknown 37.2
1795 Male, age 51, unknown 33.8
Periaquaductal grey, dorsal
nTPM: 37.7
2464 Female, age 72, unknown 39.6
2850 Male, age 76, both hemispheres 38.2
1840 Male, age 53, unknown 36.7
1831 Male, age 72, unknown 36.4
Periaquaductal grey, lateral
nTPM: 35.9
2140 Male, age 76, both hemispheres 36.9
2053 Male, age 18, unknown 36.1
2272 Male, age 74, both hemispheres 34.6
Pretectal area
nTPM: 35.9
2273 Male, age 74, both hemispheres 40.9
1944 Female, age 72, unknown 37.5
1817 Female, age 42, unknown 36.8
2224 Female, age 72, unknown 36.7
2825 Male, age 18, unknown 36.2
1815 Male, age 53, unknown 35.9
2007 Male, age 72, unknown 35.4
2316 Male, age 76, right hemisphere 35.3
1816 Male, age 51, unknown 34.9
2407 Male, age 75, both hemispheres 32.7
2667 Female, age 75, unknown 32.7
Red nucleus
nTPM: 35.9
1904 Male, age 53, unknown 38.6
1821 Female, age 72, unknown 38.1
1954 Female, age 42, unknown 38.0
2503 Female, age 72, unknown 38.0
1865 Male, age 51, unknown 37.7
2725 Female, age 75, unknown 36.3
2227 Male, age 72, unknown 35.7
2823 Male, age 76, right hemisphere 35.6
2769 Male, age 72, unknown 34.8
2785 Male, age 18, unknown 34.8
2588 Male, age 74, left hemisphere 33.0
2584 Male, age 75, left hemisphere 29.8
Substantia nigra
nTPM: 37.0
2241 Male, age 72, unknown 40.9
2409 Female, age 72, unknown 39.7
1851 Male, age 51, unknown 38.7
2590 Female, age 75, unknown 37.9
1941 Male, age 53, unknown 37.8
1889 Female, age 72, unknown 37.7
1916 Female, age 42, unknown 36.0
2699 Male, age 18, unknown 35.8
2665 Male, age 74, both hemispheres 33.8
2583 Male, age 75, right hemisphere 31.8
Superior colliculus
nTPM: 36.7
1895 Male, age 76, right hemisphere 42.9
2587 Male, age 74, left hemisphere 40.6
1913 Female, age 42, unknown 36.9
1796 Male, age 53, unknown 36.4
2668 Female, age 75, unknown 36.4
2261 Male, age 18, unknown 36.0
1839 Male, age 51, unknown 35.7
1995 Male, age 72, unknown 35.4
2087 Female, age 72, unknown 34.1
2664 Male, age 75, both hemispheres 33.0
Ventral tegmental area
nTPM: 37.5
2410 Female, age 72, unknown 41.1
2223 Female, age 72, unknown 38.1
2218 Male, age 76, both hemispheres 37.3
1915 Female, age 42, unknown 37.1
1942 Male, age 51, unknown 36.6
2021 Male, age 53, unknown 34.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.9
Samples: 139

Max nTPM: 70.2
Min nTPM: 10.1
Std nTPM: 10.3
Median nTPM: 29.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 70.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 60.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 58.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 57.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 52.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 48.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 48.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 47.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 47.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 46.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 45.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.9
FF:10158-103A5 76 years, female 24.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.0
Pig sample Sample description nTPM
Midbrain
nTPM: 42.2
Samples: 4

Max nTPM: 57.8
Min nTPM: 34.2
Sample A Female 57.8
Sample B Female 41.6
Sample C Male 34.2
Sample D Male 35.0
Periaqueductal gray
nTPM: 33.9
Samples: 3

Max nTPM: 36.3
Min nTPM: 30.6
Sample B Female 34.9
Sample C Male 36.3
Sample D Male 30.6
Substantia nigra
nTPM: 40.0
Samples: 4

Max nTPM: 58.4
Min nTPM: 28.1
Sample A Female 58.4
Sample B Female 38.5
Sample C Male 35.1
Sample D Male 28.1
Superior colliculi
nTPM: 46.0
Samples: 4

Max nTPM: 55.6
Min nTPM: 37.5
Sample A Female 55.6
Sample B Female 48.1
Sample C Male 42.6
Sample D Male 37.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 140.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 140.1
Samples: 4

Max nTPM: 147.2
Min nTPM: 133.4
Sample A Male 147.2
Sample B Male 142.3
Sample C Female 137.3
Sample D Female 133.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68844606 Antisense, RP_050222_02_A08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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