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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.6 nTPM
HPA:39.6 nTPM
GTEx:29.2 nTPM
FANTOM5:26.3 Scaled Tags Per Million
Pig:41.9 nTPM
Mouse:162.5 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.9
1857 Female, age 85, left hemisphere 41.2
2481 Female, age 94, left hemisphere 41.1
2288 Male, age 75, left hemisphere 40.8
2846 Female, age 79, unknown 40.1
1854 Male, age 80, left hemisphere 39.5
2290 Female, age 72, unknown 37.2
1781 Male, age 74, unknown 36.0
2289 Male, age 61, right hemisphere 35.0
Claustrum
nTPM: 35.8
2392 Female, age 94, both hemispheres 39.5
1956 Male, age 74, unknown 39.2
2196 Female, age 79, unknown 36.1
2491 Male, age 75, both hemispheres 36.1
2198 Male, age 80, both hemispheres 35.4
2292 Female, age 85, both hemispheres 34.3
2284 Female, age 91, both hemispheres 34.1
2568 Male, age 61, both hemispheres 33.7
2645 Female, age 72, unknown 33.6
Globus pallidus, externus
nTPM: 36.8
2395 Male, age 75, both hemispheres 44.0
2772 Female, age 79, unknown 38.9
1996 Male, age 80, right hemisphere 37.7
2646 Male, age 61, right hemisphere 33.1
2567 Female, age 72, unknown 30.4
Globus pallidus, internus
nTPM: 39.1
2483 Female, age 94, right hemisphere 44.4
2778 Female, age 91, both hemispheres 43.4
2287 Male, age 75, right hemisphere 40.3
1818 Male, age 74, unknown 38.0
2037 Male, age 80, right hemisphere 37.3
2111 Female, age 85, right hemisphere 37.0
2566 Female, age 72, unknown 33.4
Nucleus accumbens
nTPM: 39.6
2286 Male, age 75, left hemisphere 44.0
1856 Female, age 91, right hemisphere 42.4
2391 Female, age 94, left hemisphere 40.8
2698 Female, age 72, unknown 39.7
2824 Male, age 61, right hemisphere 37.9
1783 Male, age 74, unknown 37.7
1806 Female, age 85, left hemisphere 37.7
2732 Male, age 80, right hemisphere 36.4
Nucleus basalis of Meynert
nTPM: 36.6
2393 Male, age 80, right hemisphere 39.3
2821 Male, age 75, both hemispheres 37.7
2569 Male, age 61, both hemispheres 34.9
2484 Female, age 94, left hemisphere 34.5
Nucleus of the diagonal band
nTPM: 37.3
1812 Female, age 91, both hemispheres 40.0
2775 Male, age 80, right hemisphere 37.7
2195 Female, age 85, both hemispheres 37.5
1979 Male, age 74, unknown 36.8
2029 Male, age 61, right hemisphere 34.7
Olfactory tubercle
nTPM: 37.2
2856 Male, age 75, right hemisphere 38.9
1846 Male, age 80, right hemisphere 38.6
2487 Female, age 94, left hemisphere 35.8
1998 Female, age 91, both hemispheres 35.5
Putamen
nTPM: 36.8
1937 Female, age 91, right hemisphere 38.9
2482 Female, age 94, left hemisphere 38.3
1829 Male, age 74, unknown 37.9
1838 Male, age 80, right hemisphere 37.8
2466 Female, age 79, unknown 37.6
2647 Male, age 75, left hemisphere 34.8
2489 Female, age 72, unknown 31.8
Septal nuclei
nTPM: 36.4
2031 Female, age 72, unknown 41.3
2009 Female, age 91, both hemispheres 36.9
2394 Male, age 61, left hemisphere 36.7
2629 Female, age 94, right hemisphere 36.7
2199 Male, age 80, right hemisphere 35.5
1960 Male, age 74, unknown 34.4
2059 Female, age 85, both hemispheres 33.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.8
Samples: 246

Max nTPM: 68.1
Min nTPM: 11.5
Std nTPM: 8.5
Median nTPM: 26.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 68.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 53.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 53.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 53.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 52.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 50.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 47.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 46.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 45.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 44.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 42.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.8
Samples: 246

Max nTPM: 68.4
Min nTPM: 11.0
Std nTPM: 9.1
Median nTPM: 28.3
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 68.4
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 59.0
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 50.6
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 50.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 49.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 48.8
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 48.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 46.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 45.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 45.6
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 45.2
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Brain - Putamen (basal ganglia)
Average nTPM: 29.2
Samples: 205

Max nTPM: 73.1
Min nTPM: 10.9
Std nTPM: 9.7
Median nTPM: 27.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 73.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 65.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 62.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 52.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 52.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 49.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 49.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 49.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 48.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 46.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 45.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.0
FF:10164-103B2 76 years, female 18.0
Globus pallidus
Scaled Tags Per Million: 26.3
FF:10175-103C4 60 years, female 33.1
FF:10161-103A8 76 years, female 19.5
Nucleus accumbens
Scaled Tags Per Million: 21.6
FF:10037-101F1 23-56 years, mixed 21.6
Putamen
Scaled Tags Per Million: 21.0
FF:10176-103C5 60 years, female 21.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 41.9
Pig sample Sample description nTPM
Caudate
nTPM: 33.5
Samples: 4

Max nTPM: 36.6
Min nTPM: 31.4
Sample A Female 36.6
Sample B Female 31.4
Sample C Male 32.7
Sample D Male 33.1
Putamen
nTPM: 41.6
Samples: 4

Max nTPM: 54.3
Min nTPM: 33.5
Sample A Female 41.3
Sample B Female 33.5
Sample C Male 54.3
Sample D Male 37.3
Septum
nTPM: 41.9
Samples: 4

Max nTPM: 52.5
Min nTPM: 34.4
Sample A Female 52.5
Sample B Female 40.3
Sample C Male 40.5
Sample D Male 34.4
Ventral pallidum
nTPM: 34.5
Samples: 4

Max nTPM: 44.4
Min nTPM: 29.2
Sample A Female 32.6
Sample B Female 44.4
Sample C Male 29.2
Sample D Male 31.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 162.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 125.5
Samples: 4

Max nTPM: 130.7
Min nTPM: 118.6
Sample A Male 130.7
Sample B Male 118.6
Sample C Female 122.0
Sample D Female 130.6
Septum
nTPM: 162.5
Samples: 4

Max nTPM: 199.5
Min nTPM: 136.6
Sample A Male 136.6
Sample B Male 199.5
Sample C Female 162.5
Sample D Female 151.5
Ventral forebrain
nTPM: 125.7
Samples: 4

Max nTPM: 151.0
Min nTPM: 113.8
Sample A Male 122.9
Sample B Male 113.8
Sample C Female 151.0
Sample D Female 115.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
68844606 Antisense, RP_050222_02_A08, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.0
68844606 Antisense, RP_050222_02_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.