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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:54.2 nTPM
HPA:54.2 nTPM
GTEx:61.4 nTPM
FANTOM5:32.0 Scaled Tags Per Million
Mouse:26.3 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041511
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.4
2481 Female, age 94, left hemisphere 48.2
2290 Female, age 72, unknown 48.1
1781 Male, age 74, unknown 48.0
2289 Male, age 61, right hemisphere 47.7
1854 Male, age 80, left hemisphere 46.4
1857 Female, age 85, left hemisphere 46.1
2288 Male, age 75, left hemisphere 45.3
2846 Female, age 79, unknown 41.3
Claustrum
nTPM: 42.2
2284 Female, age 91, both hemispheres 46.9
2198 Male, age 80, both hemispheres 46.4
2491 Male, age 75, both hemispheres 45.5
2568 Male, age 61, both hemispheres 45.4
2645 Female, age 72, unknown 42.9
2292 Female, age 85, both hemispheres 40.6
2196 Female, age 79, unknown 38.0
2392 Female, age 94, both hemispheres 37.8
1956 Male, age 74, unknown 36.0
Globus pallidus, externus
nTPM: 54.2
2772 Female, age 79, unknown 65.7
2567 Female, age 72, unknown 58.2
1996 Male, age 80, right hemisphere 53.3
2646 Male, age 61, right hemisphere 50.0
2395 Male, age 75, both hemispheres 44.0
Globus pallidus, internus
nTPM: 47.7
2483 Female, age 94, right hemisphere 55.1
1818 Male, age 74, unknown 52.2
2566 Female, age 72, unknown 48.7
2037 Male, age 80, right hemisphere 47.3
2778 Female, age 91, both hemispheres 44.1
2287 Male, age 75, right hemisphere 43.9
2111 Female, age 85, right hemisphere 42.3
Nucleus accumbens
nTPM: 43.2
1783 Male, age 74, unknown 47.9
1806 Female, age 85, left hemisphere 46.7
1856 Female, age 91, right hemisphere 45.3
2286 Male, age 75, left hemisphere 43.0
2732 Male, age 80, right hemisphere 42.6
2824 Male, age 61, right hemisphere 42.3
2698 Female, age 72, unknown 40.6
2391 Female, age 94, left hemisphere 37.7
Nucleus basalis of Meynert
nTPM: 45.4
2569 Male, age 61, both hemispheres 51.3
2484 Female, age 94, left hemisphere 47.7
2393 Male, age 80, right hemisphere 42.8
2821 Male, age 75, both hemispheres 39.8
Nucleus of the diagonal band
nTPM: 40.9
2029 Male, age 61, right hemisphere 42.1
2775 Male, age 80, right hemisphere 41.8
1812 Female, age 91, both hemispheres 40.9
1979 Male, age 74, unknown 40.2
2195 Female, age 85, both hemispheres 39.8
Olfactory tubercle
nTPM: 41.6
1998 Female, age 91, both hemispheres 42.7
2487 Female, age 94, left hemisphere 42.2
1846 Male, age 80, right hemisphere 41.3
2856 Male, age 75, right hemisphere 40.2
Putamen
nTPM: 47.2
2647 Male, age 75, left hemisphere 53.8
2489 Female, age 72, unknown 48.3
1829 Male, age 74, unknown 46.9
2482 Female, age 94, left hemisphere 46.6
1838 Male, age 80, right hemisphere 45.9
2466 Female, age 79, unknown 44.7
1937 Female, age 91, right hemisphere 44.4
Septal nuclei
nTPM: 40.4
2394 Male, age 61, left hemisphere 44.9
2059 Female, age 85, both hemispheres 41.7
2199 Male, age 80, right hemisphere 41.1
1960 Male, age 74, unknown 39.7
2009 Female, age 91, both hemispheres 38.8
2031 Female, age 72, unknown 38.7
2629 Female, age 94, right hemisphere 38.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 61.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 56.7
Samples: 246

Max nTPM: 91.8
Min nTPM: 27.6
Std nTPM: 11.8
Median nTPM: 55.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 91.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 89.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 87.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 83.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 82.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 82.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 82.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 81.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 80.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 80.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 79.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 58.3
Samples: 246

Max nTPM: 130.6
Min nTPM: 24.0
Std nTPM: 15.7
Median nTPM: 55.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 130.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 128.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 108.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 102.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 100.7
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 99.0
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 92.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 91.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 91.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 91.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 88.2
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Brain - Putamen (basal ganglia)
Average nTPM: 61.4
Samples: 205

Max nTPM: 95.8
Min nTPM: 28.5
Std nTPM: 11.8
Median nTPM: 60.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 95.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 95.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 92.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 91.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 90.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 88.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 88.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 87.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 86.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 85.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 85.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.0
FF:10164-103B2 76 years, female 25.0
Globus pallidus
Scaled Tags Per Million: 15.3
FF:10161-103A8 76 years, female 16.4
FF:10175-103C4 60 years, female 14.2
Nucleus accumbens
Scaled Tags Per Million: 25.3
FF:10037-101F1 23-56 years, mixed 25.3
Putamen
Scaled Tags Per Million: 32.0
FF:10176-103C5 60 years, female 32.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 26.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.6
Samples: 4

Max nTPM: 31.8
Min nTPM: 15.6
Sample A Male 23.4
Sample B Male 31.8
Sample C Female 15.6
Sample D Female 19.7
Septum
nTPM: 26.3
Samples: 4

Max nTPM: 28.7
Min nTPM: 23.9
Sample A Male 24.9
Sample B Male 28.7
Sample C Female 27.7
Sample D Female 23.9
Ventral forebrain
nTPM: 25.5
Samples: 4

Max nTPM: 29.5
Min nTPM: 22.1
Sample A Male 25.0
Sample B Male 22.1
Sample C Female 29.5
Sample D Female 25.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
70431289 Antisense, RP_050614_02_E08, Mouse strain C57BL/6J (56 days, male) 0.7
73930841 Antisense, RP_051214_04_D03, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.7
70431289 Antisense, RP_050614_02_E08, Mouse strain C57BL/6J (56 days, male) 1.1
73930841 Antisense, RP_051214_04_D03, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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