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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.6 nTPM
HPA:55.6 nTPM
GTEx:56.9 nTPM
FANTOM5:16.7 Scaled Tags Per Million
Mouse:24.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.1
2019 Male, age 18, unknown 77.6
2586 Male, age 75, left hemisphere 69.0
2666 Male, age 74, left hemisphere 53.3
2828 Female, age 72, unknown 49.1
2411 Female, age 72, unknown 47.4
2219 Male, age 76, both hemispheres 46.9
1827 Male, age 72, unknown 46.5
1830 Male, age 51, unknown 45.4
1833 Male, age 53, unknown 44.1
1870 Female, age 42, unknown 41.6
Dorsal raphe nucleus
nTPM: 48.7
1828 Male, age 53, unknown 58.5
2047 Male, age 72, unknown 51.4
2298 Female, age 72, unknown 44.9
2750 Male, age 76, both hemispheres 44.4
2016 Female, age 72, unknown 44.1
Inferior colliculus
nTPM: 49.0
1890 Male, age 53, unknown 53.7
2097 Female, age 72, unknown 50.4
1848 Female, age 42, unknown 48.1
2849 Male, age 72, unknown 44.0
Median raphe nucleus
nTPM: 42.8
2220 Male, age 76, midline 42.8
Pedunculopontine tegmental nucleus
nTPM: 43.4
2334 Male, age 80, both hemispheres 46.9
1921 Female, age 85, both hemispheres 45.8
2338 Male, age 61, both hemispheres 37.6
Periaquaductal grey, anterior
nTPM: 49.5
2502 Female, age 75, unknown 52.8
1795 Male, age 51, unknown 49.7
1947 Male, age 18, unknown 45.8
Periaquaductal grey, dorsal
nTPM: 40.8
2464 Female, age 72, unknown 46.0
1840 Male, age 53, unknown 40.8
1831 Male, age 72, unknown 39.0
2850 Male, age 76, both hemispheres 37.6
Periaquaductal grey, lateral
nTPM: 40.1
2272 Male, age 74, both hemispheres 43.9
2140 Male, age 76, both hemispheres 40.2
2053 Male, age 18, unknown 36.2
Pretectal area
nTPM: 52.2
2007 Male, age 72, unknown 74.2
1817 Female, age 42, unknown 71.0
1816 Male, age 51, unknown 60.8
1944 Female, age 72, unknown 59.3
1815 Male, age 53, unknown 54.1
2667 Female, age 75, unknown 45.0
2407 Male, age 75, both hemispheres 44.7
2273 Male, age 74, both hemispheres 42.2
2316 Male, age 76, right hemisphere 41.8
2224 Female, age 72, unknown 41.2
2825 Male, age 18, unknown 40.5
Red nucleus
nTPM: 55.6
2785 Male, age 18, unknown 74.2
2588 Male, age 74, left hemisphere 60.9
2227 Male, age 72, unknown 57.7
1821 Female, age 72, unknown 57.2
1954 Female, age 42, unknown 56.9
2503 Female, age 72, unknown 56.4
2769 Male, age 72, unknown 56.3
1865 Male, age 51, unknown 52.9
1904 Male, age 53, unknown 50.9
2584 Male, age 75, left hemisphere 49.7
2725 Female, age 75, unknown 47.2
2823 Male, age 76, right hemisphere 46.9
Substantia nigra
nTPM: 54.4
1916 Female, age 42, unknown 60.9
2665 Male, age 74, both hemispheres 60.6
1889 Female, age 72, unknown 57.9
1941 Male, age 53, unknown 57.7
1851 Male, age 51, unknown 57.6
2583 Male, age 75, right hemisphere 56.7
2590 Female, age 75, unknown 50.3
2409 Female, age 72, unknown 48.4
2241 Male, age 72, unknown 48.0
2699 Male, age 18, unknown 45.8
Superior colliculus
nTPM: 48.2
2668 Female, age 75, unknown 62.7
2664 Male, age 75, both hemispheres 57.8
2087 Female, age 72, unknown 51.4
1895 Male, age 76, right hemisphere 46.7
1839 Male, age 51, unknown 45.4
2261 Male, age 18, unknown 45.1
1796 Male, age 53, unknown 45.0
2587 Male, age 74, left hemisphere 44.5
1995 Male, age 72, unknown 42.3
1913 Female, age 42, unknown 40.7
Ventral tegmental area
nTPM: 48.7
2410 Female, age 72, unknown 59.4
1915 Female, age 42, unknown 52.9
2218 Male, age 76, both hemispheres 46.9
1942 Male, age 51, unknown 45.8
2223 Female, age 72, unknown 45.1
2021 Male, age 53, unknown 42.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.9
Samples: 139

Max nTPM: 132.6
Min nTPM: 24.8
Std nTPM: 18.3
Median nTPM: 55.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 132.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 115.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 104.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 99.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 99.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 93.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 91.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 88.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 87.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 85.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 83.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.7
FF:10158-103A5 76 years, female 16.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 28.5
Min nTPM: 22.8
Sample A Male 28.5
Sample B Male 23.2
Sample C Female 22.8
Sample D Female 24.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70431289 Antisense, RP_050614_02_E08, Mouse strain C57BL/6J (56 days, male) 1.9
73930841 Antisense, RP_051214_04_D03, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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