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MFSD5
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:16.9 nTPM
HPA:16.9 nTPM
GTEx:16.1 nTPM
FANTOM5:16.9 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:35.5 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039773
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.2
2481 Female, age 94, left hemisphere 16.0
2846 Female, age 79, unknown 15.6
2288 Male, age 75, left hemisphere 15.5
1857 Female, age 85, left hemisphere 15.3
2290 Female, age 72, unknown 15.2
1854 Male, age 80, left hemisphere 15.0
2289 Male, age 61, right hemisphere 14.8
1781 Male, age 74, unknown 14.4
Claustrum
nTPM: 14.9
1956 Male, age 74, unknown 15.5
2392 Female, age 94, both hemispheres 15.2
2198 Male, age 80, both hemispheres 15.1
2292 Female, age 85, both hemispheres 15.1
2284 Female, age 91, both hemispheres 14.9
2645 Female, age 72, unknown 14.9
2491 Male, age 75, both hemispheres 14.8
2568 Male, age 61, both hemispheres 14.6
2196 Female, age 79, unknown 14.1
Globus pallidus, externus
nTPM: 16.5
1996 Male, age 80, right hemisphere 18.2
2772 Female, age 79, unknown 17.9
2395 Male, age 75, both hemispheres 16.8
2567 Female, age 72, unknown 14.7
2646 Male, age 61, right hemisphere 14.7
Globus pallidus, internus
nTPM: 16.9
2287 Male, age 75, right hemisphere 17.8
2037 Male, age 80, right hemisphere 17.5
2778 Female, age 91, both hemispheres 17.3
2111 Female, age 85, right hemisphere 17.0
2483 Female, age 94, right hemisphere 16.7
1818 Male, age 74, unknown 16.6
2566 Female, age 72, unknown 15.8
Nucleus accumbens
nTPM: 15.4
1806 Female, age 85, left hemisphere 16.2
2286 Male, age 75, left hemisphere 16.1
2732 Male, age 80, right hemisphere 15.7
2824 Male, age 61, right hemisphere 15.3
1783 Male, age 74, unknown 15.1
1856 Female, age 91, right hemisphere 15.1
2698 Female, age 72, unknown 15.1
2391 Female, age 94, left hemisphere 15.0
Nucleus basalis of Meynert
nTPM: 14.9
2484 Female, age 94, left hemisphere 14.9
2569 Male, age 61, both hemispheres 14.9
2393 Male, age 80, right hemisphere 14.8
2821 Male, age 75, both hemispheres 14.8
Nucleus of the diagonal band
nTPM: 15.5
1812 Female, age 91, both hemispheres 16.1
2775 Male, age 80, right hemisphere 16.0
2029 Male, age 61, right hemisphere 15.9
2195 Female, age 85, both hemispheres 14.9
1979 Male, age 74, unknown 14.5
Olfactory tubercle
nTPM: 15.3
2487 Female, age 94, left hemisphere 15.5
1846 Male, age 80, right hemisphere 15.4
1998 Female, age 91, both hemispheres 15.3
2856 Male, age 75, right hemisphere 14.9
Putamen
nTPM: 15.2
2482 Female, age 94, left hemisphere 16.2
2466 Female, age 79, unknown 15.8
1829 Male, age 74, unknown 15.1
2647 Male, age 75, left hemisphere 14.9
1937 Female, age 91, right hemisphere 14.8
2489 Female, age 72, unknown 14.8
1838 Male, age 80, right hemisphere 14.5
Septal nuclei
nTPM: 15.8
1960 Male, age 74, unknown 16.9
2031 Female, age 72, unknown 16.4
2394 Male, age 61, left hemisphere 16.4
2009 Female, age 91, both hemispheres 15.8
2059 Female, age 85, both hemispheres 15.8
2199 Male, age 80, right hemisphere 14.8
2629 Female, age 94, right hemisphere 14.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.9
Samples: 246

Max nTPM: 24.1
Min nTPM: 8.4
Std nTPM: 2.7
Median nTPM: 14.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 24.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 21.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 21.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 21.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 20.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 20.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 20.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 20.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 20.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 20.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.4
Samples: 246

Max nTPM: 24.6
Min nTPM: 8.9
Std nTPM: 2.8
Median nTPM: 14.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 24.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 24.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 23.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 22.1
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 21.7
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 21.2
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 20.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 20.5
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 20.0
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 20.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 19.8
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Brain - Putamen (basal ganglia)
Average nTPM: 16.1
Samples: 205

Max nTPM: 25.8
Min nTPM: 8.8
Std nTPM: 3.0
Median nTPM: 15.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 25.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 24.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 23.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 23.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 22.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 22.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 21.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 21.8
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 21.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 21.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 21.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.8
FF:10164-103B2 76 years, female 15.8
Globus pallidus
Scaled Tags Per Million: 16.9
FF:10175-103C4 60 years, female 22.8
FF:10161-103A8 76 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 16.6
FF:10037-101F1 23-56 years, mixed 16.6
Putamen
Scaled Tags Per Million: 12.6
FF:10176-103C5 60 years, female 12.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Caudate
nTPM: 6.3
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 6.7
Sample C Male 7.0
Sample D Male 6.0
Putamen
nTPM: 6.6
Samples: 4

Max nTPM: 7.6
Min nTPM: 4.7
Sample A Female 7.0
Sample B Female 4.7
Sample C Male 7.6
Sample D Male 7.0
Septum
nTPM: 6.6
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.4
Sample A Female 6.7
Sample B Female 5.4
Sample C Male 8.3
Sample D Male 5.9
Ventral pallidum
nTPM: 6.2
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.4
Sample A Female 5.7
Sample B Female 5.8
Sample C Male 7.7
Sample D Male 5.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 35.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 30.7
Samples: 4

Max nTPM: 33.1
Min nTPM: 26.0
Sample A Male 31.1
Sample B Male 32.5
Sample C Female 26.0
Sample D Female 33.1
Septum
nTPM: 35.5
Samples: 4

Max nTPM: 37.9
Min nTPM: 29.8
Sample A Male 37.1
Sample B Male 37.3
Sample C Female 37.9
Sample D Female 29.8
Ventral forebrain
nTPM: 34.7
Samples: 4

Max nTPM: 41.3
Min nTPM: 31.1
Sample A Male 33.2
Sample B Male 33.1
Sample C Female 41.3
Sample D Female 31.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
392923 Antisense, RP_040804_01_H02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
392923 Antisense, RP_040804_01_H02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.