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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.9 nTPM
HPA:25.9 nTPM
GTEx:25.8 nTPM
FANTOM5:80.2 Scaled Tags Per Million
Pig:52.6 nTPM
Mouse:60.1 nTPM
Allen mouse:0.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 25.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 24.4
1781 Male, age 74, unknown 26.4
2846 Female, age 79, unknown 26.1
2288 Male, age 75, left hemisphere 25.0
2290 Female, age 72, unknown 24.0
1854 Male, age 80, left hemisphere 23.9
2481 Female, age 94, left hemisphere 23.7
1857 Female, age 85, left hemisphere 23.2
2289 Male, age 61, right hemisphere 22.7
Claustrum
nTPM: 25.8
2568 Male, age 61, both hemispheres 28.3
2645 Female, age 72, unknown 27.6
2198 Male, age 80, both hemispheres 26.1
1956 Male, age 74, unknown 25.7
2196 Female, age 79, unknown 25.6
2392 Female, age 94, both hemispheres 25.4
2292 Female, age 85, both hemispheres 25.3
2284 Female, age 91, both hemispheres 25.1
2491 Male, age 75, both hemispheres 23.3
Globus pallidus, externus
nTPM: 23.7
2395 Male, age 75, both hemispheres 25.7
2772 Female, age 79, unknown 25.6
1996 Male, age 80, right hemisphere 24.1
2567 Female, age 72, unknown 22.2
2646 Male, age 61, right hemisphere 21.0
Globus pallidus, internus
nTPM: 24.6
2287 Male, age 75, right hemisphere 27.4
2778 Female, age 91, both hemispheres 25.9
1818 Male, age 74, unknown 25.8
2037 Male, age 80, right hemisphere 23.8
2111 Female, age 85, right hemisphere 23.6
2566 Female, age 72, unknown 23.4
2483 Female, age 94, right hemisphere 22.1
Nucleus accumbens
nTPM: 23.7
2286 Male, age 75, left hemisphere 25.9
2824 Male, age 61, right hemisphere 24.7
1783 Male, age 74, unknown 24.5
2391 Female, age 94, left hemisphere 23.9
2698 Female, age 72, unknown 23.5
1856 Female, age 91, right hemisphere 23.2
1806 Female, age 85, left hemisphere 23.1
2732 Male, age 80, right hemisphere 20.8
Nucleus basalis of Meynert
nTPM: 23.1
2821 Male, age 75, both hemispheres 26.3
2484 Female, age 94, left hemisphere 23.4
2393 Male, age 80, right hemisphere 22.7
2569 Male, age 61, both hemispheres 19.9
Nucleus of the diagonal band
nTPM: 25.6
1812 Female, age 91, both hemispheres 27.4
2775 Male, age 80, right hemisphere 26.8
2029 Male, age 61, right hemisphere 26.5
2195 Female, age 85, both hemispheres 26.1
1979 Male, age 74, unknown 21.4
Olfactory tubercle
nTPM: 25.9
2487 Female, age 94, left hemisphere 26.9
1846 Male, age 80, right hemisphere 26.4
1998 Female, age 91, both hemispheres 26.2
2856 Male, age 75, right hemisphere 24.1
Putamen
nTPM: 24.8
2466 Female, age 79, unknown 26.3
1829 Male, age 74, unknown 25.5
2482 Female, age 94, left hemisphere 25.1
1838 Male, age 80, right hemisphere 24.6
2647 Male, age 75, left hemisphere 24.4
2489 Female, age 72, unknown 24.2
1937 Female, age 91, right hemisphere 23.3
Septal nuclei
nTPM: 23.9
1960 Male, age 74, unknown 27.5
2629 Female, age 94, right hemisphere 26.6
2031 Female, age 72, unknown 24.7
2009 Female, age 91, both hemispheres 24.2
2059 Female, age 85, both hemispheres 22.5
2199 Male, age 80, right hemisphere 20.8
2394 Male, age 61, left hemisphere 20.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.5
Samples: 246

Max nTPM: 40.6
Min nTPM: 14.7
Std nTPM: 4.6
Median nTPM: 25.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 40.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 40.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 36.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 36.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 35.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 35.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 35.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 34.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 34.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 34.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 34.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.0
Samples: 246

Max nTPM: 46.8
Min nTPM: 10.8
Std nTPM: 5.0
Median nTPM: 24.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 46.8
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 40.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 38.4
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 36.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 34.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 34.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 34.4
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 33.3
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 33.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 32.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 32.7
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Brain - Putamen (basal ganglia)
Average nTPM: 25.8
Samples: 205

Max nTPM: 43.8
Min nTPM: 14.8
Std nTPM: 5.0
Median nTPM: 25.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 43.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 40.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 39.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 39.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 37.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 36.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 35.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 34.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 34.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 34.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 34.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.5
FF:10164-103B2 76 years, female 55.5
Globus pallidus
Scaled Tags Per Million: 69.9
FF:10175-103C4 60 years, female 78.1
FF:10161-103A8 76 years, female 61.7
Nucleus accumbens
Scaled Tags Per Million: 80.2
FF:10037-101F1 23-56 years, mixed 80.2
Putamen
Scaled Tags Per Million: 62.6
FF:10176-103C5 60 years, female 62.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 52.6
Pig sample Sample description nTPM
Caudate
nTPM: 44.5
Samples: 4

Max nTPM: 52.9
Min nTPM: 39.5
Sample A Female 39.5
Sample B Female 44.1
Sample C Male 52.9
Sample D Male 41.6
Putamen
nTPM: 52.6
Samples: 4

Max nTPM: 64.0
Min nTPM: 42.5
Sample A Female 45.5
Sample B Female 42.5
Sample C Male 64.0
Sample D Male 58.5
Septum
nTPM: 43.8
Samples: 4

Max nTPM: 49.0
Min nTPM: 38.8
Sample A Female 43.6
Sample B Female 38.8
Sample C Male 49.0
Sample D Male 43.6
Ventral pallidum
nTPM: 41.9
Samples: 4

Max nTPM: 45.3
Min nTPM: 36.2
Sample A Female 36.2
Sample B Female 42.3
Sample C Male 43.9
Sample D Male 45.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 60.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 60.1
Samples: 4

Max nTPM: 61.9
Min nTPM: 56.0
Sample A Male 61.9
Sample B Male 61.3
Sample C Female 56.0
Sample D Female 61.1
Septum
nTPM: 54.9
Samples: 4

Max nTPM: 57.8
Min nTPM: 51.8
Sample A Male 57.8
Sample B Male 51.8
Sample C Female 55.0
Sample D Female 54.8
Ventral forebrain
nTPM: 53.2
Samples: 4

Max nTPM: 57.5
Min nTPM: 47.6
Sample A Male 47.6
Sample B Male 57.5
Sample C Female 53.7
Sample D Female 54.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
1593 Antisense, RP_040428_01_G05, Mouse strain C57BL/6J (56 days, male) 0.5
1594 Antisense, RP_040428_01_G05, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.4
1593 Antisense, RP_040428_01_G05, Mouse strain C57BL/6J (56 days, male) 0.4
1594 Antisense, RP_040428_01_G05, Mouse strain C57BL/6J (56 days, male) 0.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.