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SRPRA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.9 nTPM
HPA:26.9 nTPM
GTEx:23.9 nTPM
FANTOM5:69.1 Scaled Tags Per Million
Pig:71.0 nTPM
Mouse:59.6 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
2019 Male, age 18, unknown 31.9
2666 Male, age 74, left hemisphere 26.8
1827 Male, age 72, unknown 24.9
1870 Female, age 42, unknown 24.5
2411 Female, age 72, unknown 24.4
2586 Male, age 75, left hemisphere 24.1
2828 Female, age 72, unknown 23.9
1830 Male, age 51, unknown 23.5
1833 Male, age 53, unknown 23.0
2219 Male, age 76, both hemispheres 22.3
Dorsal raphe nucleus
nTPM: 23.6
1828 Male, age 53, unknown 25.6
2750 Male, age 76, both hemispheres 25.2
2298 Female, age 72, unknown 23.5
2047 Male, age 72, unknown 23.2
2016 Female, age 72, unknown 20.6
Inferior colliculus
nTPM: 24.3
2097 Female, age 72, unknown 25.2
1890 Male, age 53, unknown 24.2
1848 Female, age 42, unknown 24.1
2849 Male, age 72, unknown 23.9
Median raphe nucleus
nTPM: 25.0
2220 Male, age 76, midline 25.0
Pedunculopontine tegmental nucleus
nTPM: 25.7
2338 Male, age 61, both hemispheres 26.7
2334 Male, age 80, both hemispheres 26.1
1921 Female, age 85, both hemispheres 24.2
Periaquaductal grey, anterior
nTPM: 23.5
2502 Female, age 75, unknown 24.8
1947 Male, age 18, unknown 23.3
1795 Male, age 51, unknown 22.4
Periaquaductal grey, dorsal
nTPM: 23.5
2850 Male, age 76, both hemispheres 26.4
1831 Male, age 72, unknown 24.1
1840 Male, age 53, unknown 21.8
2464 Female, age 72, unknown 21.7
Periaquaductal grey, lateral
nTPM: 23.4
2140 Male, age 76, both hemispheres 25.9
2272 Male, age 74, both hemispheres 23.3
2053 Male, age 18, unknown 21.0
Pretectal area
nTPM: 26.9
1817 Female, age 42, unknown 33.7
2007 Male, age 72, unknown 32.1
1816 Male, age 51, unknown 32.0
1944 Female, age 72, unknown 29.7
1815 Male, age 53, unknown 29.0
2667 Female, age 75, unknown 25.8
2407 Male, age 75, both hemispheres 23.9
2316 Male, age 76, right hemisphere 22.8
2224 Female, age 72, unknown 22.4
2273 Male, age 74, both hemispheres 22.4
2825 Male, age 18, unknown 22.1
Red nucleus
nTPM: 26.1
2785 Male, age 18, unknown 30.6
1821 Female, age 72, unknown 28.3
2725 Female, age 75, unknown 27.2
2584 Male, age 75, left hemisphere 26.6
1954 Female, age 42, unknown 26.4
2823 Male, age 76, right hemisphere 26.2
1865 Male, age 51, unknown 26.0
1904 Male, age 53, unknown 25.0
2769 Male, age 72, unknown 24.8
2227 Male, age 72, unknown 24.7
2588 Male, age 74, left hemisphere 24.2
2503 Female, age 72, unknown 23.3
Substantia nigra
nTPM: 25.5
1889 Female, age 72, unknown 28.5
1941 Male, age 53, unknown 27.6
2665 Male, age 74, both hemispheres 27.0
1851 Male, age 51, unknown 26.1
1916 Female, age 42, unknown 25.7
2409 Female, age 72, unknown 25.6
2583 Male, age 75, right hemisphere 25.0
2241 Male, age 72, unknown 24.4
2590 Female, age 75, unknown 23.5
2699 Male, age 18, unknown 22.0
Superior colliculus
nTPM: 24.1
2087 Female, age 72, unknown 26.5
1895 Male, age 76, right hemisphere 25.2
2261 Male, age 18, unknown 25.1
1796 Male, age 53, unknown 24.5
2668 Female, age 75, unknown 24.2
1913 Female, age 42, unknown 23.6
2587 Male, age 74, left hemisphere 23.5
1995 Male, age 72, unknown 23.1
1839 Male, age 51, unknown 22.8
2664 Male, age 75, both hemispheres 22.1
Ventral tegmental area
nTPM: 24.3
2218 Male, age 76, both hemispheres 26.6
2410 Female, age 72, unknown 26.1
1915 Female, age 42, unknown 24.1
2223 Female, age 72, unknown 23.5
1942 Male, age 51, unknown 23.0
2021 Male, age 53, unknown 22.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.9
Samples: 139

Max nTPM: 52.8
Min nTPM: 12.5
Std nTPM: 5.9
Median nTPM: 23.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 44.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 36.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 35.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 34.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 34.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 34.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 33.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 32.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 32.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 32.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.1
FF:10158-103A5 76 years, female 69.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.0
Pig sample Sample description nTPM
Midbrain
nTPM: 57.1
Samples: 4

Max nTPM: 72.6
Min nTPM: 47.0
Sample A Female 72.6
Sample B Female 47.0
Sample C Male 57.2
Sample D Male 51.5
Periaqueductal gray
nTPM: 44.0
Samples: 3

Max nTPM: 46.6
Min nTPM: 40.8
Sample B Female 40.8
Sample C Male 46.6
Sample D Male 44.5
Substantia nigra
nTPM: 55.7
Samples: 4

Max nTPM: 63.8
Min nTPM: 52.0
Sample A Female 63.8
Sample B Female 52.9
Sample C Male 54.0
Sample D Male 52.0
Superior colliculi
nTPM: 71.1
Samples: 4

Max nTPM: 83.5
Min nTPM: 61.8
Sample A Female 74.2
Sample B Female 83.5
Sample C Male 64.7
Sample D Male 61.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 62.6
Min nTPM: 56.6
Sample A Male 56.6
Sample B Male 59.5
Sample C Female 62.6
Sample D Female 59.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
1594 Antisense, RP_040428_01_G05, Mouse strain C57BL/6J (56 days, male) 0.5
1593 Antisense, RP_040428_01_G05, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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