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SMDT1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:22.2 nTPM
HPA:22.2 nTPM
GTEx:23.7 nTPM
FANTOM5:65.6 Scaled Tags Per Million
Pig:42.2 nTPM
Mouse:213.0 nTPM
Allen mouse:4.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA032117
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 22.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 22.2
2846 Female, age 79, unknown 23.7
1854 Male, age 80, left hemisphere 22.9
1857 Female, age 85, left hemisphere 22.7
1781 Male, age 74, unknown 22.2
2288 Male, age 75, left hemisphere 22.2
2290 Female, age 72, unknown 21.5
2289 Male, age 61, right hemisphere 21.4
2481 Female, age 94, left hemisphere 21.2
Claustrum
nTPM: 20.7
2392 Female, age 94, both hemispheres 21.8
2568 Male, age 61, both hemispheres 21.3
2284 Female, age 91, both hemispheres 21.2
2196 Female, age 79, unknown 20.7
2491 Male, age 75, both hemispheres 20.7
1956 Male, age 74, unknown 20.5
2198 Male, age 80, both hemispheres 20.3
2645 Female, age 72, unknown 20.0
2292 Female, age 85, both hemispheres 19.8
Globus pallidus, externus
nTPM: 21.1
1996 Male, age 80, right hemisphere 21.7
2395 Male, age 75, both hemispheres 21.6
2772 Female, age 79, unknown 21.6
2646 Male, age 61, right hemisphere 20.5
2567 Female, age 72, unknown 20.0
Globus pallidus, internus
nTPM: 21.6
2287 Male, age 75, right hemisphere 23.1
1818 Male, age 74, unknown 22.5
2778 Female, age 91, both hemispheres 22.3
2483 Female, age 94, right hemisphere 21.2
2037 Male, age 80, right hemisphere 20.7
2111 Female, age 85, right hemisphere 20.7
2566 Female, age 72, unknown 20.3
Nucleus accumbens
nTPM: 22.2
2286 Male, age 75, left hemisphere 23.8
1856 Female, age 91, right hemisphere 22.8
1783 Male, age 74, unknown 22.5
2824 Male, age 61, right hemisphere 22.5
1806 Female, age 85, left hemisphere 21.9
2698 Female, age 72, unknown 21.8
2732 Male, age 80, right hemisphere 21.4
2391 Female, age 94, left hemisphere 21.2
Nucleus basalis of Meynert
nTPM: 21.4
2393 Male, age 80, right hemisphere 21.8
2484 Female, age 94, left hemisphere 21.6
2569 Male, age 61, both hemispheres 21.6
2821 Male, age 75, both hemispheres 20.5
Nucleus of the diagonal band
nTPM: 21.5
2775 Male, age 80, right hemisphere 22.7
1812 Female, age 91, both hemispheres 21.5
2029 Male, age 61, right hemisphere 21.3
2195 Female, age 85, both hemispheres 21.3
1979 Male, age 74, unknown 20.8
Olfactory tubercle
nTPM: 21.8
2856 Male, age 75, right hemisphere 22.0
1998 Female, age 91, both hemispheres 21.8
1846 Male, age 80, right hemisphere 21.7
2487 Female, age 94, left hemisphere 21.7
Putamen
nTPM: 21.7
1838 Male, age 80, right hemisphere 23.1
1937 Female, age 91, right hemisphere 22.4
2466 Female, age 79, unknown 21.5
2482 Female, age 94, left hemisphere 21.5
2647 Male, age 75, left hemisphere 21.4
1829 Male, age 74, unknown 21.2
2489 Female, age 72, unknown 21.0
Septal nuclei
nTPM: 21.2
2009 Female, age 91, both hemispheres 21.6
2059 Female, age 85, both hemispheres 21.4
1960 Male, age 74, unknown 21.3
2629 Female, age 94, right hemisphere 21.3
2031 Female, age 72, unknown 21.2
2199 Male, age 80, right hemisphere 21.1
2394 Male, age 61, left hemisphere 20.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.9
Samples: 246

Max nTPM: 54.2
Min nTPM: 10.4
Std nTPM: 5.6
Median nTPM: 20.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 54.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 43.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 43.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 39.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 38.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 34.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 32.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 32.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 32.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 31.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 31.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.7
Samples: 246

Max nTPM: 68.7
Min nTPM: 6.9
Std nTPM: 7.7
Median nTPM: 22.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 68.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 67.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 49.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 48.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 44.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 39.1
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 38.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 38.7
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 38.6
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 38.1
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 37.9
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Brain - Putamen (basal ganglia)
Average nTPM: 21.5
Samples: 205

Max nTPM: 51.6
Min nTPM: 12.1
Std nTPM: 5.4
Median nTPM: 20.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 51.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 36.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 34.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 34.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 33.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 33.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 33.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 32.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 32.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 32.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 32.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 60.5
FF:10164-103B2 76 years, female 60.5
Globus pallidus
Scaled Tags Per Million: 44.9
FF:10175-103C4 60 years, female 48.1
FF:10161-103A8 76 years, female 41.7
Nucleus accumbens
Scaled Tags Per Million: 55.2
FF:10037-101F1 23-56 years, mixed 55.2
Putamen
Scaled Tags Per Million: 65.6
FF:10176-103C5 60 years, female 65.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.2
Pig sample Sample description nTPM
Caudate
nTPM: 30.5
Samples: 4

Max nTPM: 36.8
Min nTPM: 26.1
Sample A Female 27.8
Sample B Female 36.8
Sample C Male 31.2
Sample D Male 26.1
Putamen
nTPM: 42.3
Samples: 4

Max nTPM: 53.8
Min nTPM: 34.8
Sample A Female 44.6
Sample B Female 35.8
Sample C Male 53.8
Sample D Male 34.8
Septum
nTPM: 32.0
Samples: 4

Max nTPM: 34.1
Min nTPM: 29.7
Sample A Female 34.1
Sample B Female 33.9
Sample C Male 30.4
Sample D Male 29.7
Ventral pallidum
nTPM: 33.0
Samples: 4

Max nTPM: 45.1
Min nTPM: 25.3
Sample A Female 25.3
Sample B Female 45.1
Sample C Male 35.7
Sample D Male 25.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 213.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 213.0
Samples: 4

Max nTPM: 238.8
Min nTPM: 189.4
Sample A Male 216.7
Sample B Male 238.8
Sample C Female 189.4
Sample D Female 207.2
Septum
nTPM: 202.8
Samples: 4

Max nTPM: 225.6
Min nTPM: 174.3
Sample A Male 174.3
Sample B Male 223.2
Sample C Female 225.6
Sample D Female 188.0
Ventral forebrain
nTPM: 188.9
Samples: 4

Max nTPM: 254.8
Min nTPM: 160.2
Sample A Male 175.9
Sample B Male 164.8
Sample C Female 254.8
Sample D Female 160.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.0
68523156 Antisense, RP_050118_02_C04, Mouse strain C57BL/6J (56 days, male) 5.2
75651168 Antisense, RP_060518_01_C03, Mouse strain C57BL/6J (56 days, male) 2.9
Pallidum
Expression energy: 4.1
68523156 Antisense, RP_050118_02_C04, Mouse strain C57BL/6J (56 days, male) 5.2
75651168 Antisense, RP_060518_01_C03, Mouse strain C57BL/6J (56 days, male) 2.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.