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SMDT1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:22.1 nTPM
HPA:22.1 nTPM
GTEx:20.4 nTPM
FANTOM5:46.1 Scaled Tags Per Million
Pig:32.7 nTPM
Mouse:166.0 nTPM
Allen mouse:5.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA032117
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.1
Sample id Sample description nTPM
Hippocampus
nTPM: 20.4
2148 Female, age 91, left hemisphere 21.2
1898 Male, age 80, left hemisphere 20.8
2621 Female, age 67, right hemisphere 20.8
2529 Female, age 94, left hemisphere 20.1
1855 Male, age 76, left hemisphere 20.0
1911 Female, age 85, right hemisphere 19.7
Dentate gyrus
nTPM: 20.5
2528 Male, age 74, both hemispheres 21.9
1927 Female, age 91, both hemispheres 21.0
2246 Female, age 85, both hemispheres 20.5
2010 Male, age 76, both hemispheres 20.2
2531 Female, age 67, both hemispheres 20.0
2530 Female, age 94, left hemisphere 19.6
Entorhinal gyrus
nTPM: 21.4
2764 Male, age 80, right hemisphere 22.0
1938 Female, age 85, left hemisphere 21.9
2686 Male, age 75, right hemisphere 21.8
2613 Female, age 94, left hemisphere 21.0
2117 Female, age 91, right hemisphere 20.9
1787 Male, age 76, left hemisphere 20.6
Hippocampus, CA1
nTPM: 21.1
2527 Male, age 74, both hemispheres 22.0
2082 Female, age 91, right hemisphere 21.9
2749 Male, age 80, left hemisphere 21.2
1873 Female, age 85, both hemispheres 21.1
2045 Male, age 76, both hemispheres 19.3
Hippocampus, CA2
nTPM: 21.0
1892 Male, age 76, both hemispheres 22.0
2437 Female, age 94, left hemisphere 21.1
1963 Male, age 80, left hemisphere 21.0
2113 Female, age 91, right hemisphere 20.8
1940 Female, age 85, left hemisphere 20.7
2249 Male, age 74, both hemispheres 20.5
Hippocampus, CA3
nTPM: 21.2
2861 Female, age 67, both hemispheres 22.0
2620 Female, age 94, left hemisphere 21.8
2137 Male, age 80, left hemisphere 21.1
1891 Female, age 85, both hemispheres 20.9
2436 Male, age 74, both hemispheres 20.8
1867 Male, age 76, both hemispheres 20.6
Parahippocampal cortex
nTPM: 21.6
1850 Male, age 80, both hemispheres 22.5
2693 Female, age 94, both hemispheres 22.4
2622 Female, age 67, right hemisphere 22.0
2692 Male, age 74, both hemispheres 22.0
1933 Female, age 85, both hemispheres 21.8
2245 Female, age 91, both hemispheres 21.5
2250 Female, age 67, right hemisphere 21.3
1990 Female, age 91, right hemisphere 21.1
2532 Female, age 72, left hemisphere 20.9
2018 Male, age 76, both hemispheres 20.3
Perirhinal gyrus
nTPM: 22.1
1841 Female, age 85, right hemisphere 22.7
2848 Male, age 76, right hemisphere 22.3
1794 Male, age 80, right hemisphere 22.2
1847 Female, age 91, left hemisphere 21.8
2521 Female, age 94, right hemisphere 21.8
Subiculum
nTPM: 20.1
1977 Female, age 85, both hemispheres 21.3
2619 Male, age 74, both hemispheres 21.3
1901 Male, age 80, both hemispheres 20.4
2042 Male, age 76, both hemispheres 19.8
2438 Female, age 94, left hemisphere 19.8
2729 Female, age 91, right hemisphere 18.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.4
Samples: 197

Max nTPM: 54.5
Min nTPM: 9.6
Std nTPM: 5.8
Median nTPM: 19.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 54.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 41.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 39.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 35.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 32.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 30.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 30.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 30.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 30.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 30.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 29.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 46.1
FF:10169-103B7 60 years, female 47.0
FF:10153-102I9 76 years, female 45.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 32.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 32.7
Samples: 4

Max nTPM: 42.8
Min nTPM: 22.5
Sample A Female 42.8
Sample B Female 32.5
Sample C Male 33.0
Sample D Male 22.5
Entorhinal cortex
nTPM: 31.9
Samples: 4

Max nTPM: 44.8
Min nTPM: 22.5
Sample A Female 27.5
Sample B Female 44.8
Sample C Male 32.7
Sample D Male 22.5
Subiculum
nTPM: 26.6
Samples: 4

Max nTPM: 33.6
Min nTPM: 21.3
Sample A Female 33.6
Sample B Female 27.4
Sample C Male 21.3
Sample D Male 23.9
Ventral hippocampus
nTPM: 29.5
Samples: 4

Max nTPM: 31.3
Min nTPM: 27.3
Sample A Female 30.8
Sample B Female 28.6
Sample C Male 31.3
Sample D Male 27.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 166.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 150.0
Samples: 4

Max nTPM: 157.0
Min nTPM: 141.4
Sample A Male 157.0
Sample B Male 149.2
Sample C Female 152.2
Sample D Female 141.4
Hippocampal formation
nTPM: 166.0
Samples: 4

Max nTPM: 180.8
Min nTPM: 150.7
Sample A Male 173.4
Sample B Male 150.7
Sample C Female 159.1
Sample D Female 180.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.0
68523156 Antisense, RP_050118_02_C04, Mouse strain C57BL/6J (56 days, male) 7.1
75651168 Antisense, RP_060518_01_C03, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.