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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.8 nTPM
HPA:79.8 nTPM
GTEx:87.1 nTPM
FANTOM5:101.8 Scaled Tags Per Million
Pig:117.9 nTPM
Mouse:209.5 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.2
2411 Female, age 72, unknown 81.5
1870 Female, age 42, unknown 80.7
1833 Male, age 53, unknown 76.9
1830 Male, age 51, unknown 76.0
1827 Male, age 72, unknown 75.7
2019 Male, age 18, unknown 75.4
2828 Female, age 72, unknown 72.5
2219 Male, age 76, both hemispheres 72.3
2586 Male, age 75, left hemisphere 70.7
2666 Male, age 74, left hemisphere 70.4
Dorsal raphe nucleus
nTPM: 79.8
2298 Female, age 72, unknown 84.3
2750 Male, age 76, both hemispheres 82.0
2016 Female, age 72, unknown 79.5
1828 Male, age 53, unknown 78.1
2047 Male, age 72, unknown 74.9
Inferior colliculus
nTPM: 76.7
2097 Female, age 72, unknown 82.0
1890 Male, age 53, unknown 76.3
1848 Female, age 42, unknown 75.2
2849 Male, age 72, unknown 73.4
Median raphe nucleus
nTPM: 78.8
2220 Male, age 76, midline 78.8
Pedunculopontine tegmental nucleus
nTPM: 78.2
2338 Male, age 61, both hemispheres 79.1
2334 Male, age 80, both hemispheres 78.0
1921 Female, age 85, both hemispheres 77.5
Periaquaductal grey, anterior
nTPM: 79.8
2502 Female, age 75, unknown 82.4
1947 Male, age 18, unknown 81.2
1795 Male, age 51, unknown 75.7
Periaquaductal grey, dorsal
nTPM: 77.8
2850 Male, age 76, both hemispheres 80.6
2464 Female, age 72, unknown 78.8
1840 Male, age 53, unknown 77.8
1831 Male, age 72, unknown 73.9
Periaquaductal grey, lateral
nTPM: 76.5
2272 Male, age 74, both hemispheres 79.0
2140 Male, age 76, both hemispheres 75.5
2053 Male, age 18, unknown 75.1
Pretectal area
nTPM: 76.6
2224 Female, age 72, unknown 81.1
2273 Male, age 74, both hemispheres 80.0
1817 Female, age 42, unknown 77.7
1944 Female, age 72, unknown 77.3
2825 Male, age 18, unknown 77.3
2316 Male, age 76, right hemisphere 77.2
1815 Male, age 53, unknown 76.8
1816 Male, age 51, unknown 76.6
2667 Female, age 75, unknown 75.3
2007 Male, age 72, unknown 74.9
2407 Male, age 75, both hemispheres 68.5
Red nucleus
nTPM: 78.0
1821 Female, age 72, unknown 84.7
1954 Female, age 42, unknown 82.0
1904 Male, age 53, unknown 81.5
1865 Male, age 51, unknown 80.0
2503 Female, age 72, unknown 80.0
2227 Male, age 72, unknown 79.0
2823 Male, age 76, right hemisphere 77.5
2769 Male, age 72, unknown 77.3
2725 Female, age 75, unknown 76.4
2785 Male, age 18, unknown 74.8
2588 Male, age 74, left hemisphere 71.7
2584 Male, age 75, left hemisphere 71.1
Substantia nigra
nTPM: 77.0
2241 Male, age 72, unknown 86.9
1889 Female, age 72, unknown 78.9
1851 Male, age 51, unknown 78.7
1916 Female, age 42, unknown 78.2
2590 Female, age 75, unknown 76.9
2699 Male, age 18, unknown 76.3
1941 Male, age 53, unknown 74.1
2409 Female, age 72, unknown 73.9
2665 Male, age 74, both hemispheres 73.8
2583 Male, age 75, right hemisphere 72.5
Superior colliculus
nTPM: 76.1
1995 Male, age 72, unknown 79.3
1913 Female, age 42, unknown 78.8
2261 Male, age 18, unknown 77.8
2087 Female, age 72, unknown 76.5
2587 Male, age 74, left hemisphere 76.5
1796 Male, age 53, unknown 76.3
2668 Female, age 75, unknown 75.8
1895 Male, age 76, right hemisphere 75.7
1839 Male, age 51, unknown 75.4
2664 Male, age 75, both hemispheres 69.2
Ventral tegmental area
nTPM: 78.4
2410 Female, age 72, unknown 81.6
2223 Female, age 72, unknown 79.1
2218 Male, age 76, both hemispheres 78.7
1915 Female, age 42, unknown 77.6
1942 Male, age 51, unknown 77.1
2021 Male, age 53, unknown 76.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.1
Samples: 139

Max nTPM: 151.6
Min nTPM: 60.2
Std nTPM: 17.0
Median nTPM: 81.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 151.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 143.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 131.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 127.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 127.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 123.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 119.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 118.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 116.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 115.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 115.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.8
FF:10158-103A5 76 years, female 101.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 117.9
Pig sample Sample description nTPM
Midbrain
nTPM: 117.9
Samples: 4

Max nTPM: 206.8
Min nTPM: 81.5
Sample A Female 206.8
Sample B Female 99.9
Sample C Male 83.3
Sample D Male 81.5
Periaqueductal gray
nTPM: 89.9
Samples: 3

Max nTPM: 96.4
Min nTPM: 86.0
Sample B Female 87.4
Sample C Male 96.4
Sample D Male 86.0
Substantia nigra
nTPM: 108.2
Samples: 4

Max nTPM: 158.6
Min nTPM: 85.3
Sample A Female 158.6
Sample B Female 85.3
Sample C Male 97.3
Sample D Male 91.7
Superior colliculi
nTPM: 110.7
Samples: 4

Max nTPM: 147.2
Min nTPM: 93.3
Sample A Female 147.2
Sample B Female 101.3
Sample C Male 101.0
Sample D Male 93.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 209.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 209.5
Samples: 4

Max nTPM: 224.1
Min nTPM: 195.8
Sample A Male 215.5
Sample B Male 195.8
Sample C Female 202.6
Sample D Female 224.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
671225 Antisense, RP_040914_01_G11, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.