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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:10.2 nTPM
HPA:10.2 nTPM
GTEx:13.9 nTPM
FANTOM5:16.6 Scaled Tags Per Million
Pig:15.3 nTPM
Mouse:11.1 nTPM
Allen mouse:1.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA020872
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 10.2
Sample id Sample description nTPM
Hippocampus
nTPM: 9.4
1898 Male, age 80, left hemisphere 10.7
2621 Female, age 67, right hemisphere 10.7
1911 Female, age 85, right hemisphere 9.3
2148 Female, age 91, left hemisphere 9.2
2529 Female, age 94, left hemisphere 8.4
1855 Male, age 76, left hemisphere 8.1
Dentate gyrus
nTPM: 9.7
2010 Male, age 76, both hemispheres 10.9
2528 Male, age 74, both hemispheres 10.7
1927 Female, age 91, both hemispheres 10.4
2246 Female, age 85, both hemispheres 9.7
2530 Female, age 94, left hemisphere 9.0
2531 Female, age 67, both hemispheres 7.6
Entorhinal gyrus
nTPM: 8.7
2117 Female, age 91, right hemisphere 10.5
2764 Male, age 80, right hemisphere 10.3
2613 Female, age 94, left hemisphere 8.5
2686 Male, age 75, right hemisphere 8.5
1787 Male, age 76, left hemisphere 8.0
1938 Female, age 85, left hemisphere 6.5
Hippocampus, CA1
nTPM: 9.7
2749 Male, age 80, left hemisphere 11.1
1873 Female, age 85, both hemispheres 9.8
2527 Male, age 74, both hemispheres 9.4
2082 Female, age 91, right hemisphere 9.2
2045 Male, age 76, both hemispheres 9.0
Hippocampus, CA2
nTPM: 10.1
2249 Male, age 74, both hemispheres 11.9
1892 Male, age 76, both hemispheres 11.2
1963 Male, age 80, left hemisphere 10.1
2437 Female, age 94, left hemisphere 9.2
2113 Female, age 91, right hemisphere 9.1
1940 Female, age 85, left hemisphere 9.0
Hippocampus, CA3
nTPM: 10.2
2436 Male, age 74, both hemispheres 13.7
2620 Female, age 94, left hemisphere 11.1
1867 Male, age 76, both hemispheres 9.9
1891 Female, age 85, both hemispheres 9.5
2137 Male, age 80, left hemisphere 9.1
2861 Female, age 67, both hemispheres 7.7
Parahippocampal cortex
nTPM: 9.0
2018 Male, age 76, both hemispheres 10.3
1850 Male, age 80, both hemispheres 9.8
1990 Female, age 91, right hemisphere 9.7
2692 Male, age 74, both hemispheres 9.6
2693 Female, age 94, both hemispheres 9.3
2250 Female, age 67, right hemisphere 8.9
2622 Female, age 67, right hemisphere 8.8
2245 Female, age 91, both hemispheres 8.3
2532 Female, age 72, left hemisphere 8.3
1933 Female, age 85, both hemispheres 7.3
Perirhinal gyrus
nTPM: 9.1
2848 Male, age 76, right hemisphere 9.7
1794 Male, age 80, right hemisphere 9.4
1847 Female, age 91, left hemisphere 9.1
2521 Female, age 94, right hemisphere 8.8
1841 Female, age 85, right hemisphere 8.7
Subiculum
nTPM: 9.3
2619 Male, age 74, both hemispheres 10.3
2729 Female, age 91, right hemisphere 10.1
1901 Male, age 80, both hemispheres 9.8
1977 Female, age 85, both hemispheres 9.6
2042 Male, age 76, both hemispheres 8.8
2438 Female, age 94, left hemisphere 7.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.9
Samples: 197

Max nTPM: 24.7
Min nTPM: 4.9
Std nTPM: 3.6
Median nTPM: 14.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 24.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 23.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 23.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 21.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 21.2
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 20.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 20.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 20.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 19.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 19.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 19.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.6
FF:10153-102I9 76 years, female 18.6
FF:10169-103B7 60 years, female 14.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 15.3
Samples: 4

Max nTPM: 16.7
Min nTPM: 13.6
Sample A Female 15.6
Sample B Female 15.1
Sample C Male 16.7
Sample D Male 13.6
Entorhinal cortex
nTPM: 14.0
Samples: 4

Max nTPM: 15.1
Min nTPM: 13.1
Sample A Female 13.3
Sample B Female 14.6
Sample C Male 15.1
Sample D Male 13.1
Subiculum
nTPM: 15.3
Samples: 4

Max nTPM: 17.2
Min nTPM: 14.1
Sample A Female 17.2
Sample B Female 14.2
Sample C Male 15.8
Sample D Male 14.1
Ventral hippocampus
nTPM: 15.3
Samples: 4

Max nTPM: 17.3
Min nTPM: 13.3
Sample A Female 14.8
Sample B Female 13.3
Sample C Male 17.3
Sample D Male 15.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 11.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.1
Samples: 4

Max nTPM: 12.9
Min nTPM: 9.7
Sample A Male 10.7
Sample B Male 12.9
Sample C Female 10.9
Sample D Female 9.7
Hippocampal formation
nTPM: 9.5
Samples: 4

Max nTPM: 11.5
Min nTPM: 8.4
Sample A Male 9.5
Sample B Male 8.5
Sample C Female 8.4
Sample D Female 11.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
71570747 Antisense, RP_050512_01_G01, Mouse strain C57BL/6J (56 days, male) 1.0

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