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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:156.5 nTPM
HPA:156.5 nTPM
GTEx:224.3 nTPM
FANTOM5:476.9 Scaled Tags Per Million
Pig:150.7 nTPM
Mouse:75.9 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 156.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 130.1
2219 Male, age 76, both hemispheres 161.5
1830 Male, age 51, unknown 141.0
2586 Male, age 75, left hemisphere 141.0
2411 Female, age 72, unknown 140.9
1833 Male, age 53, unknown 133.4
1870 Female, age 42, unknown 128.9
2019 Male, age 18, unknown 127.7
2828 Female, age 72, unknown 121.8
1827 Male, age 72, unknown 103.8
2666 Male, age 74, left hemisphere 101.1
Dorsal raphe nucleus
nTPM: 104.0
2750 Male, age 76, both hemispheres 139.1
2016 Female, age 72, unknown 111.6
1828 Male, age 53, unknown 105.6
2047 Male, age 72, unknown 86.5
2298 Female, age 72, unknown 77.3
Inferior colliculus
nTPM: 103.4
1890 Male, age 53, unknown 116.3
1848 Female, age 42, unknown 100.5
2849 Male, age 72, unknown 99.5
2097 Female, age 72, unknown 97.5
Median raphe nucleus
nTPM: 75.9
2220 Male, age 76, midline 75.9
Pedunculopontine tegmental nucleus
nTPM: 104.1
2334 Male, age 80, both hemispheres 113.8
2338 Male, age 61, both hemispheres 100.7
1921 Female, age 85, both hemispheres 97.7
Periaquaductal grey, anterior
nTPM: 97.4
2502 Female, age 75, unknown 111.2
1947 Male, age 18, unknown 92.6
1795 Male, age 51, unknown 88.5
Periaquaductal grey, dorsal
nTPM: 82.6
2464 Female, age 72, unknown 108.8
1831 Male, age 72, unknown 82.9
1840 Male, age 53, unknown 77.0
2850 Male, age 76, both hemispheres 61.5
Periaquaductal grey, lateral
nTPM: 85.2
2053 Male, age 18, unknown 93.6
2272 Male, age 74, both hemispheres 93.4
2140 Male, age 76, both hemispheres 68.4
Pretectal area
nTPM: 100.4
2316 Male, age 76, right hemisphere 134.0
1815 Male, age 53, unknown 122.3
1817 Female, age 42, unknown 112.4
2007 Male, age 72, unknown 110.5
2407 Male, age 75, both hemispheres 108.2
2667 Female, age 75, unknown 96.1
2825 Male, age 18, unknown 96.1
2224 Female, age 72, unknown 85.6
2273 Male, age 74, both hemispheres 81.4
1816 Male, age 51, unknown 80.1
1944 Female, age 72, unknown 77.2
Red nucleus
nTPM: 156.5
2769 Male, age 72, unknown 180.5
2227 Male, age 72, unknown 180.0
2503 Female, age 72, unknown 179.7
1904 Male, age 53, unknown 176.4
1865 Male, age 51, unknown 168.7
2823 Male, age 76, right hemisphere 165.4
2588 Male, age 74, left hemisphere 156.1
1821 Female, age 72, unknown 155.8
2785 Male, age 18, unknown 150.2
1954 Female, age 42, unknown 144.2
2584 Male, age 75, left hemisphere 117.6
2725 Female, age 75, unknown 103.2
Substantia nigra
nTPM: 106.9
2699 Male, age 18, unknown 138.2
1851 Male, age 51, unknown 121.5
2583 Male, age 75, right hemisphere 119.0
2665 Male, age 74, both hemispheres 114.7
2409 Female, age 72, unknown 111.3
1889 Female, age 72, unknown 107.1
2590 Female, age 75, unknown 103.8
1916 Female, age 42, unknown 90.2
1941 Male, age 53, unknown 82.3
2241 Male, age 72, unknown 81.2
Superior colliculus
nTPM: 119.1
2668 Female, age 75, unknown 155.3
1995 Male, age 72, unknown 149.8
1895 Male, age 76, right hemisphere 140.7
1913 Female, age 42, unknown 132.2
1839 Male, age 51, unknown 119.2
2587 Male, age 74, left hemisphere 113.3
2664 Male, age 75, both hemispheres 112.8
1796 Male, age 53, unknown 97.6
2261 Male, age 18, unknown 87.6
2087 Female, age 72, unknown 83.1
Ventral tegmental area
nTPM: 106.8
2410 Female, age 72, unknown 124.1
2223 Female, age 72, unknown 119.1
1915 Female, age 42, unknown 105.5
1942 Male, age 51, unknown 103.4
2021 Male, age 53, unknown 99.3
2218 Male, age 76, both hemispheres 89.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 224.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 224.3
Samples: 139

Max nTPM: 496.0
Min nTPM: 42.9
Std nTPM: 88.3
Median nTPM: 207.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 496.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 437.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 435.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 423.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 412.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 397.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 392.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 385.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 370.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 359.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 356.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 476.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 476.9
FF:10158-103A5 76 years, female 476.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 150.7
Pig sample Sample description nTPM
Midbrain
nTPM: 148.3
Samples: 4

Max nTPM: 209.6
Min nTPM: 108.3
Sample A Female 209.6
Sample B Female 162.1
Sample C Male 108.3
Sample D Male 113.1
Periaqueductal gray
nTPM: 111.2
Samples: 3

Max nTPM: 140.2
Min nTPM: 94.2
Sample B Female 140.2
Sample C Male 94.2
Sample D Male 99.3
Substantia nigra
nTPM: 150.7
Samples: 4

Max nTPM: 198.9
Min nTPM: 107.2
Sample A Female 180.0
Sample B Female 107.2
Sample C Male 116.6
Sample D Male 198.9
Superior colliculi
nTPM: 128.2
Samples: 4

Max nTPM: 168.8
Min nTPM: 70.3
Sample A Female 168.8
Sample B Female 70.3
Sample C Male 130.6
Sample D Male 143.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 75.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.9
Samples: 4

Max nTPM: 85.3
Min nTPM: 65.8
Sample A Male 85.3
Sample B Male 65.8
Sample C Female 69.3
Sample D Female 83.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
70437828 Antisense, RP_050614_03_A03, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.