ABOUTMENU
HELP
NEWS
NRBP2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.7 nTPM
HPA:35.7 nTPM
GTEx:38.4 nTPM
FANTOM5:139.7 Scaled Tags Per Million
Pig:48.7 nTPM
Mouse:41.6 nTPM
Allen mouse:12.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.0
1830 Male, age 51, unknown 36.7
1833 Male, age 53, unknown 34.2
1870 Female, age 42, unknown 33.9
2019 Male, age 18, unknown 31.8
2411 Female, age 72, unknown 29.3
2828 Female, age 72, unknown 28.9
2586 Male, age 75, left hemisphere 28.8
2666 Male, age 74, left hemisphere 23.7
1827 Male, age 72, unknown 22.0
2219 Male, age 76, both hemispheres 20.3
Dorsal raphe nucleus
nTPM: 24.8
2750 Male, age 76, both hemispheres 34.0
2016 Female, age 72, unknown 26.2
1828 Male, age 53, unknown 25.1
2047 Male, age 72, unknown 20.0
2298 Female, age 72, unknown 18.5
Inferior colliculus
nTPM: 20.3
1848 Female, age 42, unknown 22.5
2849 Male, age 72, unknown 22.3
1890 Male, age 53, unknown 20.9
2097 Female, age 72, unknown 15.4
Median raphe nucleus
nTPM: 24.7
2220 Male, age 76, midline 24.7
Pedunculopontine tegmental nucleus
nTPM: 26.0
1921 Female, age 85, both hemispheres 26.1
2338 Male, age 61, both hemispheres 26.0
2334 Male, age 80, both hemispheres 25.9
Periaquaductal grey, anterior
nTPM: 22.5
2502 Female, age 75, unknown 23.2
1947 Male, age 18, unknown 23.0
1795 Male, age 51, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 21.3
2850 Male, age 76, both hemispheres 26.3
2464 Female, age 72, unknown 21.6
1831 Male, age 72, unknown 20.6
1840 Male, age 53, unknown 16.8
Periaquaductal grey, lateral
nTPM: 26.2
2272 Male, age 74, both hemispheres 30.8
2140 Male, age 76, both hemispheres 25.8
2053 Male, age 18, unknown 22.1
Pretectal area
nTPM: 22.7
2667 Female, age 75, unknown 27.8
2407 Male, age 75, both hemispheres 27.7
2273 Male, age 74, both hemispheres 27.6
1815 Male, age 53, unknown 24.9
2825 Male, age 18, unknown 23.4
2316 Male, age 76, right hemisphere 22.6
1817 Female, age 42, unknown 20.6
2007 Male, age 72, unknown 20.6
2224 Female, age 72, unknown 20.3
1944 Female, age 72, unknown 18.0
1816 Male, age 51, unknown 16.3
Red nucleus
nTPM: 35.7
2227 Male, age 72, unknown 43.1
2769 Male, age 72, unknown 42.2
1865 Male, age 51, unknown 41.7
1904 Male, age 53, unknown 40.2
2823 Male, age 76, right hemisphere 36.6
2785 Male, age 18, unknown 34.9
1821 Female, age 72, unknown 34.5
1954 Female, age 42, unknown 34.1
2588 Male, age 74, left hemisphere 33.9
2584 Male, age 75, left hemisphere 30.9
2503 Female, age 72, unknown 30.4
2725 Female, age 75, unknown 26.0
Substantia nigra
nTPM: 24.0
2699 Male, age 18, unknown 29.2
2583 Male, age 75, right hemisphere 28.8
2590 Female, age 75, unknown 28.2
1851 Male, age 51, unknown 25.8
1889 Female, age 72, unknown 23.5
1916 Female, age 42, unknown 21.9
2409 Female, age 72, unknown 21.6
1941 Male, age 53, unknown 21.4
2665 Male, age 74, both hemispheres 21.1
2241 Male, age 72, unknown 17.9
Superior colliculus
nTPM: 24.7
1913 Female, age 42, unknown 36.1
1995 Male, age 72, unknown 33.9
2587 Male, age 74, left hemisphere 27.1
1839 Male, age 51, unknown 23.2
1895 Male, age 76, right hemisphere 22.9
2664 Male, age 75, both hemispheres 22.9
1796 Male, age 53, unknown 21.7
2668 Female, age 75, unknown 21.7
2261 Male, age 18, unknown 19.6
2087 Female, age 72, unknown 18.3
Ventral tegmental area
nTPM: 27.7
2223 Female, age 72, unknown 41.7
2218 Male, age 76, both hemispheres 27.0
2410 Female, age 72, unknown 25.5
2021 Male, age 53, unknown 25.3
1942 Male, age 51, unknown 24.3
1915 Female, age 42, unknown 22.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.4
Samples: 139

Max nTPM: 109.0
Min nTPM: 2.1
Std nTPM: 16.7
Median nTPM: 35.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 109.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 102.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 95.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 84.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 72.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 71.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 71.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 70.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 68.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 59.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 58.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.7
FF:10158-103A5 76 years, female 139.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.7
Pig sample Sample description nTPM
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 75.5
Min nTPM: 27.9
Sample A Female 75.5
Sample B Female 39.7
Sample C Male 33.9
Sample D Male 27.9
Periaqueductal gray
nTPM: 36.7
Samples: 3

Max nTPM: 37.6
Min nTPM: 36.2
Sample B Female 36.2
Sample C Male 37.6
Sample D Male 36.4
Substantia nigra
nTPM: 48.8
Samples: 4

Max nTPM: 58.8
Min nTPM: 40.5
Sample A Female 46.2
Sample B Female 40.5
Sample C Male 49.5
Sample D Male 58.8
Superior colliculi
nTPM: 32.4
Samples: 4

Max nTPM: 38.7
Min nTPM: 23.0
Sample A Female 34.7
Sample B Female 23.0
Sample C Male 33.3
Sample D Male 38.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.6
Samples: 4

Max nTPM: 51.2
Min nTPM: 31.4
Sample A Male 47.5
Sample B Male 31.4
Sample C Female 36.2
Sample D Female 51.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.6
75774686 Antisense, RP_060530_01_D11, Mouse strain C57BL/6J (56 days, male) 15.7
68300884 Antisense, RP_041129_02_D01, Mouse strain C57BL/6J (56 days, male) 9.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.