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FAM174B
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA:16.0 nTPM
GTEx:9.8 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:12.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.9
2411 Female, age 72, unknown 11.9
1833 Male, age 53, unknown 11.0
2586 Male, age 75, left hemisphere 10.3
2219 Male, age 76, both hemispheres 10.2
1830 Male, age 51, unknown 10.1
1870 Female, age 42, unknown 10.0
1827 Male, age 72, unknown 9.5
2666 Male, age 74, left hemisphere 9.2
2019 Male, age 18, unknown 8.6
2828 Female, age 72, unknown 7.7
Dorsal raphe nucleus
nTPM: 13.0
2298 Female, age 72, unknown 15.0
2047 Male, age 72, unknown 14.8
2750 Male, age 76, both hemispheres 14.7
2016 Female, age 72, unknown 10.3
1828 Male, age 53, unknown 10.1
Inferior colliculus
nTPM: 9.0
2849 Male, age 72, unknown 9.4
1848 Female, age 42, unknown 9.2
2097 Female, age 72, unknown 9.0
1890 Male, age 53, unknown 8.4
Median raphe nucleus
nTPM: 16.0
2220 Male, age 76, midline 16.0
Pedunculopontine tegmental nucleus
nTPM: 11.2
2334 Male, age 80, both hemispheres 12.0
1921 Female, age 85, both hemispheres 11.8
2338 Male, age 61, both hemispheres 9.9
Periaquaductal grey, anterior
nTPM: 9.3
2502 Female, age 75, unknown 10.5
1947 Male, age 18, unknown 9.4
1795 Male, age 51, unknown 7.9
Periaquaductal grey, dorsal
nTPM: 9.4
1840 Male, age 53, unknown 10.3
2850 Male, age 76, both hemispheres 9.6
2464 Female, age 72, unknown 9.2
1831 Male, age 72, unknown 8.6
Periaquaductal grey, lateral
nTPM: 9.0
2053 Male, age 18, unknown 9.5
2140 Male, age 76, both hemispheres 9.0
2272 Male, age 74, both hemispheres 8.5
Pretectal area
nTPM: 9.0
2825 Male, age 18, unknown 11.8
2224 Female, age 72, unknown 11.5
2407 Male, age 75, both hemispheres 9.5
1944 Female, age 72, unknown 9.1
2316 Male, age 76, right hemisphere 8.5
2667 Female, age 75, unknown 8.5
1816 Male, age 51, unknown 8.4
2007 Male, age 72, unknown 8.4
1815 Male, age 53, unknown 8.2
2273 Male, age 74, both hemispheres 8.1
1817 Female, age 42, unknown 6.8
Red nucleus
nTPM: 12.1
1904 Male, age 53, unknown 14.1
1821 Female, age 72, unknown 13.8
2823 Male, age 76, right hemisphere 13.5
1954 Female, age 42, unknown 13.4
2227 Male, age 72, unknown 13.2
2769 Male, age 72, unknown 12.8
2584 Male, age 75, left hemisphere 12.5
2588 Male, age 74, left hemisphere 12.1
1865 Male, age 51, unknown 11.2
2725 Female, age 75, unknown 10.2
2503 Female, age 72, unknown 9.9
2785 Male, age 18, unknown 8.7
Substantia nigra
nTPM: 12.0
2241 Male, age 72, unknown 15.0
1916 Female, age 42, unknown 14.5
1941 Male, age 53, unknown 14.1
2699 Male, age 18, unknown 12.7
1851 Male, age 51, unknown 12.4
2583 Male, age 75, right hemisphere 12.2
2665 Male, age 74, both hemispheres 10.7
1889 Female, age 72, unknown 10.1
2590 Female, age 75, unknown 9.3
2409 Female, age 72, unknown 8.7
Superior colliculus
nTPM: 8.9
2668 Female, age 75, unknown 11.8
1839 Male, age 51, unknown 9.8
1895 Male, age 76, right hemisphere 9.7
2664 Male, age 75, both hemispheres 9.2
2087 Female, age 72, unknown 9.0
2261 Male, age 18, unknown 8.9
1796 Male, age 53, unknown 8.8
2587 Male, age 74, left hemisphere 8.8
1913 Female, age 42, unknown 6.8
1995 Male, age 72, unknown 5.8
Ventral tegmental area
nTPM: 12.2
2218 Male, age 76, both hemispheres 14.1
1942 Male, age 51, unknown 13.0
1915 Female, age 42, unknown 12.7
2410 Female, age 72, unknown 12.2
2223 Female, age 72, unknown 11.3
2021 Male, age 53, unknown 10.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.8
Samples: 139

Max nTPM: 23.9
Min nTPM: 3.5
Std nTPM: 3.9
Median nTPM: 9.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 23.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 22.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 19.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 18.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 18.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 18.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 17.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 16.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 15.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 15.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 8.1
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 5.4
Sample C Male 8.1
Sample D Male 5.7
Periaqueductal gray
nTPM: 6.9
Samples: 3

Max nTPM: 8.0
Min nTPM: 4.6
Sample B Female 4.6
Sample C Male 8.0
Sample D Male 8.0
Substantia nigra
nTPM: 8.8
Samples: 4

Max nTPM: 12.1
Min nTPM: 1.9
Sample A Female 11.3
Sample B Female 12.1
Sample C Male 9.7
Sample D Male 1.9
Superior colliculi
nTPM: 10.8
Samples: 4

Max nTPM: 20.2
Min nTPM: 4.5
Sample A Female 13.7
Sample B Female 20.2
Sample C Male 4.7
Sample D Male 4.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.6
Samples: 4

Max nTPM: 13.5
Min nTPM: 12.1
Sample A Male 12.1
Sample B Male 12.4
Sample C Female 13.5
Sample D Female 12.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
77800947 Antisense, RP_070219_01_B09, Mouse strain C57BL/6J (56 days, male) 1.1
67815960 Antisense, RP_040920_02_D02, Mouse strain C57BL/6J (56 days, male) 0.6
74819036 Antisense, RP_060315_02_B04, Mouse strain C57BL/6J (56 days, male) 0.5
71210989 Antisense, RP_050816_01_A02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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