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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.5 nTPM
HPA:58.5 nTPM
GTEx:45.4 nTPM
FANTOM5:91.3 Scaled Tags Per Million
Pig:58.5 nTPM
Mouse:66.7 nTPM
Allen mouse:3.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA039337
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 55.9
2846 Female, age 79, unknown 59.6
1854 Male, age 80, left hemisphere 56.8
1781 Male, age 74, unknown 56.4
2290 Female, age 72, unknown 55.2
1857 Female, age 85, left hemisphere 55.1
2481 Female, age 94, left hemisphere 54.9
2288 Male, age 75, left hemisphere 54.5
2289 Male, age 61, right hemisphere 54.4
Claustrum
nTPM: 55.0
2196 Female, age 79, unknown 56.5
2645 Female, age 72, unknown 56.2
2198 Male, age 80, both hemispheres 55.4
2392 Female, age 94, both hemispheres 55.0
1956 Male, age 74, unknown 54.9
2568 Male, age 61, both hemispheres 54.8
2284 Female, age 91, both hemispheres 54.7
2491 Male, age 75, both hemispheres 53.9
2292 Female, age 85, both hemispheres 53.6
Globus pallidus, externus
nTPM: 52.2
2395 Male, age 75, both hemispheres 53.8
1996 Male, age 80, right hemisphere 52.8
2772 Female, age 79, unknown 52.4
2567 Female, age 72, unknown 51.9
2646 Male, age 61, right hemisphere 50.2
Globus pallidus, internus
nTPM: 53.0
2287 Male, age 75, right hemisphere 54.5
2483 Female, age 94, right hemisphere 54.5
2037 Male, age 80, right hemisphere 53.3
2778 Female, age 91, both hemispheres 52.6
1818 Male, age 74, unknown 52.4
2566 Female, age 72, unknown 52.2
2111 Female, age 85, right hemisphere 51.8
Nucleus accumbens
nTPM: 55.6
1856 Female, age 91, right hemisphere 59.6
2698 Female, age 72, unknown 57.2
1783 Male, age 74, unknown 55.5
2391 Female, age 94, left hemisphere 55.2
2824 Male, age 61, right hemisphere 55.2
2286 Male, age 75, left hemisphere 54.6
1806 Female, age 85, left hemisphere 54.5
2732 Male, age 80, right hemisphere 52.6
Nucleus basalis of Meynert
nTPM: 54.7
2821 Male, age 75, both hemispheres 56.5
2393 Male, age 80, right hemisphere 55.9
2484 Female, age 94, left hemisphere 54.7
2569 Male, age 61, both hemispheres 51.7
Nucleus of the diagonal band
nTPM: 58.5
2195 Female, age 85, both hemispheres 61.1
2775 Male, age 80, right hemisphere 59.6
1812 Female, age 91, both hemispheres 58.6
2029 Male, age 61, right hemisphere 58.3
1979 Male, age 74, unknown 54.6
Olfactory tubercle
nTPM: 58.4
1846 Male, age 80, right hemisphere 59.5
2487 Female, age 94, left hemisphere 58.9
1998 Female, age 91, both hemispheres 58.1
2856 Male, age 75, right hemisphere 57.2
Putamen
nTPM: 56.0
1838 Male, age 80, right hemisphere 57.9
2466 Female, age 79, unknown 56.3
2482 Female, age 94, left hemisphere 56.1
2489 Female, age 72, unknown 55.9
1829 Male, age 74, unknown 55.6
1937 Female, age 91, right hemisphere 55.6
2647 Male, age 75, left hemisphere 54.6
Septal nuclei
nTPM: 57.3
2031 Female, age 72, unknown 60.5
1960 Male, age 74, unknown 60.4
2629 Female, age 94, right hemisphere 58.7
2009 Female, age 91, both hemispheres 57.8
2059 Female, age 85, both hemispheres 56.3
2199 Male, age 80, right hemisphere 53.8
2394 Male, age 61, left hemisphere 53.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.1
Samples: 246

Max nTPM: 71.8
Min nTPM: 26.6
Std nTPM: 6.9
Median nTPM: 38.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 71.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 65.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 62.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 61.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 59.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 56.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 56.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 56.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 56.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 53.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 53.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.4
Samples: 246

Max nTPM: 75.4
Min nTPM: 29.4
Std nTPM: 7.9
Median nTPM: 44.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 75.4
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 70.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 68.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 68.2
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 66.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 65.9
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 65.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 65.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 65.2
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 65.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 64.0
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Brain - Putamen (basal ganglia)
Average nTPM: 41.6
Samples: 205

Max nTPM: 68.6
Min nTPM: 29.9
Std nTPM: 7.1
Median nTPM: 40.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 68.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 63.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 63.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 63.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 61.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 59.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 58.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 57.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 56.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 55.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 55.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 78.1
FF:10164-103B2 76 years, female 78.1
Globus pallidus
Scaled Tags Per Million: 70.2
FF:10175-103C4 60 years, female 89.1
FF:10161-103A8 76 years, female 51.3
Nucleus accumbens
Scaled Tags Per Million: 91.3
FF:10037-101F1 23-56 years, mixed 91.3
Putamen
Scaled Tags Per Million: 79.5
FF:10176-103C5 60 years, female 79.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 58.5
Pig sample Sample description nTPM
Caudate
nTPM: 55.9
Samples: 4

Max nTPM: 61.9
Min nTPM: 49.6
Sample A Female 49.6
Sample B Female 59.7
Sample C Male 61.9
Sample D Male 52.2
Putamen
nTPM: 58.5
Samples: 4

Max nTPM: 70.2
Min nTPM: 51.4
Sample A Female 51.4
Sample B Female 52.5
Sample C Male 70.2
Sample D Male 59.8
Septum
nTPM: 50.4
Samples: 4

Max nTPM: 67.0
Min nTPM: 40.5
Sample A Female 67.0
Sample B Female 50.2
Sample C Male 43.8
Sample D Male 40.5
Ventral pallidum
nTPM: 52.8
Samples: 4

Max nTPM: 58.1
Min nTPM: 41.0
Sample A Female 57.5
Sample B Female 58.1
Sample C Male 41.0
Sample D Male 54.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 66.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.4
Samples: 4

Max nTPM: 60.2
Min nTPM: 48.3
Sample A Male 48.3
Sample B Male 51.6
Sample C Female 57.5
Sample D Female 60.2
Septum
nTPM: 56.1
Samples: 4

Max nTPM: 63.0
Min nTPM: 43.2
Sample A Male 59.4
Sample B Male 58.8
Sample C Female 63.0
Sample D Female 43.2
Ventral forebrain
nTPM: 66.8
Samples: 4

Max nTPM: 74.3
Min nTPM: 58.5
Sample A Male 68.9
Sample B Male 58.5
Sample C Female 74.3
Sample D Female 65.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
68499368 Antisense, RP_050118_01_D08, Mouse strain C57BL/6J (56 days, male) 3.2
Pallidum
Expression energy: 2.4
68499368 Antisense, RP_050118_01_D08, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.