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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.7 nTPM
HPA:54.7 nTPM
GTEx:42.6 nTPM
FANTOM5:57.0 Scaled Tags Per Million
Pig:52.8 nTPM
Mouse:47.5 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.8
2219 Male, age 76, both hemispheres 58.4
1827 Male, age 72, unknown 54.2
1870 Female, age 42, unknown 53.1
2666 Male, age 74, left hemisphere 52.8
1833 Male, age 53, unknown 52.3
2586 Male, age 75, left hemisphere 51.9
2828 Female, age 72, unknown 51.9
1830 Male, age 51, unknown 51.8
2019 Male, age 18, unknown 51.2
2411 Female, age 72, unknown 50.7
Dorsal raphe nucleus
nTPM: 51.9
2750 Male, age 76, both hemispheres 52.9
2047 Male, age 72, unknown 52.1
2298 Female, age 72, unknown 52.1
1828 Male, age 53, unknown 51.3
2016 Female, age 72, unknown 51.0
Inferior colliculus
nTPM: 52.6
1890 Male, age 53, unknown 53.2
2097 Female, age 72, unknown 53.2
1848 Female, age 42, unknown 52.0
2849 Male, age 72, unknown 52.0
Median raphe nucleus
nTPM: 54.7
2220 Male, age 76, midline 54.7
Pedunculopontine tegmental nucleus
nTPM: 53.2
2338 Male, age 61, both hemispheres 54.4
1921 Female, age 85, both hemispheres 53.2
2334 Male, age 80, both hemispheres 52.1
Periaquaductal grey, anterior
nTPM: 52.4
1795 Male, age 51, unknown 53.4
1947 Male, age 18, unknown 52.3
2502 Female, age 75, unknown 51.5
Periaquaductal grey, dorsal
nTPM: 52.5
2850 Male, age 76, both hemispheres 53.3
1831 Male, age 72, unknown 53.2
1840 Male, age 53, unknown 53.0
2464 Female, age 72, unknown 50.5
Periaquaductal grey, lateral
nTPM: 52.3
2053 Male, age 18, unknown 54.3
2272 Male, age 74, both hemispheres 51.8
2140 Male, age 76, both hemispheres 50.9
Pretectal area
nTPM: 53.9
1816 Male, age 51, unknown 57.0
1944 Female, age 72, unknown 55.5
1815 Male, age 53, unknown 55.3
2007 Male, age 72, unknown 55.0
1817 Female, age 42, unknown 54.2
2407 Male, age 75, both hemispheres 53.9
2667 Female, age 75, unknown 53.8
2224 Female, age 72, unknown 53.3
2825 Male, age 18, unknown 52.7
2273 Male, age 74, both hemispheres 51.8
2316 Male, age 76, right hemisphere 50.9
Red nucleus
nTPM: 52.2
2725 Female, age 75, unknown 55.3
2584 Male, age 75, left hemisphere 54.6
1954 Female, age 42, unknown 53.3
1821 Female, age 72, unknown 53.2
2503 Female, age 72, unknown 52.4
1904 Male, age 53, unknown 52.2
2588 Male, age 74, left hemisphere 51.5
2769 Male, age 72, unknown 51.4
1865 Male, age 51, unknown 51.2
2823 Male, age 76, right hemisphere 51.1
2785 Male, age 18, unknown 50.7
2227 Male, age 72, unknown 49.8
Substantia nigra
nTPM: 54.6
2241 Male, age 72, unknown 58.3
1916 Female, age 42, unknown 56.2
2699 Male, age 18, unknown 55.8
1851 Male, age 51, unknown 55.6
1889 Female, age 72, unknown 54.6
2665 Male, age 74, both hemispheres 54.1
1941 Male, age 53, unknown 53.8
2409 Female, age 72, unknown 53.7
2583 Male, age 75, right hemisphere 52.3
2590 Female, age 75, unknown 51.9
Superior colliculus
nTPM: 53.1
2087 Female, age 72, unknown 54.8
2261 Male, age 18, unknown 54.5
1796 Male, age 53, unknown 54.2
1895 Male, age 76, right hemisphere 54.1
2668 Female, age 75, unknown 53.7
2587 Male, age 74, left hemisphere 53.5
2664 Male, age 75, both hemispheres 52.8
1913 Female, age 42, unknown 52.5
1995 Male, age 72, unknown 50.7
1839 Male, age 51, unknown 50.5
Ventral tegmental area
nTPM: 53.7
1915 Female, age 42, unknown 54.9
2223 Female, age 72, unknown 54.4
2218 Male, age 76, both hemispheres 54.1
1942 Male, age 51, unknown 53.8
2410 Female, age 72, unknown 53.2
2021 Male, age 53, unknown 51.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.6
Samples: 139

Max nTPM: 65.5
Min nTPM: 28.6
Std nTPM: 6.8
Median nTPM: 41.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 65.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 63.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 61.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 58.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 56.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 54.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 53.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 53.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 53.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 52.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 52.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.0
FF:10158-103A5 76 years, female 57.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.8
Pig sample Sample description nTPM
Midbrain
nTPM: 48.0
Samples: 4

Max nTPM: 59.4
Min nTPM: 39.0
Sample A Female 59.4
Sample B Female 50.3
Sample C Male 43.3
Sample D Male 39.0
Periaqueductal gray
nTPM: 41.7
Samples: 3

Max nTPM: 44.9
Min nTPM: 38.7
Sample B Female 41.4
Sample C Male 44.9
Sample D Male 38.7
Substantia nigra
nTPM: 52.9
Samples: 4

Max nTPM: 66.0
Min nTPM: 44.4
Sample A Female 66.0
Sample B Female 48.7
Sample C Male 52.3
Sample D Male 44.4
Superior colliculi
nTPM: 48.3
Samples: 4

Max nTPM: 57.5
Min nTPM: 44.0
Sample A Female 57.5
Sample B Female 46.6
Sample C Male 44.0
Sample D Male 45.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.6
Samples: 4

Max nTPM: 54.5
Min nTPM: 41.9
Sample A Male 54.5
Sample B Male 47.9
Sample C Female 41.9
Sample D Female 45.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
68499368 Antisense, RP_050118_01_D08, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.