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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.9 nTPM
HPA:48.9 nTPM
GTEx:32.2 nTPM
FANTOM5:196.2 Scaled Tags Per Million
Pig:10.0 nTPM
Mouse:0.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.4
2666 Male, age 74, left hemisphere 52.1
1830 Male, age 51, unknown 40.2
2019 Male, age 18, unknown 39.7
1833 Male, age 53, unknown 39.6
1870 Female, age 42, unknown 39.3
2586 Male, age 75, left hemisphere 38.3
2411 Female, age 72, unknown 34.6
2828 Female, age 72, unknown 28.6
1827 Male, age 72, unknown 23.1
2219 Male, age 76, both hemispheres 18.4
Dorsal raphe nucleus
nTPM: 15.3
2750 Male, age 76, both hemispheres 36.8
1828 Male, age 53, unknown 16.4
2016 Female, age 72, unknown 15.0
2047 Male, age 72, unknown 5.0
2298 Female, age 72, unknown 3.4
Inferior colliculus
nTPM: 14.4
1890 Male, age 53, unknown 15.9
1848 Female, age 42, unknown 15.6
2849 Male, age 72, unknown 15.2
2097 Female, age 72, unknown 10.8
Median raphe nucleus
nTPM: 8.6
2220 Male, age 76, midline 8.6
Pedunculopontine tegmental nucleus
nTPM: 22.8
2334 Male, age 80, both hemispheres 27.8
2338 Male, age 61, both hemispheres 26.3
1921 Female, age 85, both hemispheres 14.2
Periaquaductal grey, anterior
nTPM: 13.5
1947 Male, age 18, unknown 16.3
2502 Female, age 75, unknown 13.1
1795 Male, age 51, unknown 11.0
Periaquaductal grey, dorsal
nTPM: 8.5
2464 Female, age 72, unknown 18.0
1831 Male, age 72, unknown 12.8
1840 Male, age 53, unknown 1.9
2850 Male, age 76, both hemispheres 1.4
Periaquaductal grey, lateral
nTPM: 10.8
2272 Male, age 74, both hemispheres 17.4
2053 Male, age 18, unknown 14.0
2140 Male, age 76, both hemispheres 1.1
Pretectal area
nTPM: 17.8
1815 Male, age 53, unknown 32.5
2316 Male, age 76, right hemisphere 23.9
2007 Male, age 72, unknown 23.0
2407 Male, age 75, both hemispheres 22.7
1817 Female, age 42, unknown 22.1
2825 Male, age 18, unknown 17.4
1816 Male, age 51, unknown 13.8
1944 Female, age 72, unknown 13.5
2273 Male, age 74, both hemispheres 11.6
2224 Female, age 72, unknown 9.2
2667 Female, age 75, unknown 6.4
Red nucleus
nTPM: 48.9
1865 Male, age 51, unknown 61.9
2823 Male, age 76, right hemisphere 60.2
2503 Female, age 72, unknown 57.7
1821 Female, age 72, unknown 54.6
1904 Male, age 53, unknown 54.5
2725 Female, age 75, unknown 54.3
2227 Male, age 72, unknown 52.3
2769 Male, age 72, unknown 46.3
2785 Male, age 18, unknown 44.1
1954 Female, age 42, unknown 43.1
2584 Male, age 75, left hemisphere 31.2
2588 Male, age 74, left hemisphere 26.9
Substantia nigra
nTPM: 27.0
2590 Female, age 75, unknown 50.1
2583 Male, age 75, right hemisphere 48.8
2409 Female, age 72, unknown 36.6
1851 Male, age 51, unknown 25.8
1889 Female, age 72, unknown 22.8
2699 Male, age 18, unknown 21.8
2665 Male, age 74, both hemispheres 20.5
2241 Male, age 72, unknown 17.1
1941 Male, age 53, unknown 14.2
1916 Female, age 42, unknown 12.2
Superior colliculus
nTPM: 25.5
1995 Male, age 72, unknown 38.8
2587 Male, age 74, left hemisphere 38.7
1913 Female, age 42, unknown 38.4
1895 Male, age 76, right hemisphere 29.3
1839 Male, age 51, unknown 24.6
2668 Female, age 75, unknown 21.0
1796 Male, age 53, unknown 19.6
2087 Female, age 72, unknown 15.9
2664 Male, age 75, both hemispheres 15.2
2261 Male, age 18, unknown 14.0
Ventral tegmental area
nTPM: 23.1
2223 Female, age 72, unknown 32.7
2410 Female, age 72, unknown 28.2
2021 Male, age 53, unknown 23.0
1915 Female, age 42, unknown 18.4
1942 Male, age 51, unknown 18.3
2218 Male, age 76, both hemispheres 17.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.2
Samples: 139

Max nTPM: 94.3
Min nTPM: 3.5
Std nTPM: 19.1
Median nTPM: 26.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 94.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 91.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 89.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 86.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 80.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 79.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 79.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 74.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 64.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 64.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 63.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 196.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 196.2
FF:10158-103A5 76 years, female 196.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.0
Pig sample Sample description nTPM
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 22.3
Min nTPM: 3.5
Sample A Female 22.3
Sample B Female 5.1
Sample C Male 9.1
Sample D Male 3.5
Periaqueductal gray
nTPM: 3.6
Samples: 3

Max nTPM: 4.5
Min nTPM: 2.4
Sample B Female 4.5
Sample C Male 2.4
Sample D Male 3.9
Substantia nigra
nTPM: 9.1
Samples: 4

Max nTPM: 11.5
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 11.5
Sample C Male 8.3
Sample D Male 9.1
Superior colliculi
nTPM: 6.8
Samples: 4

Max nTPM: 11.6
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 5.6
Sample C Male 11.6
Sample D Male 6.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.6
Sample A Male 0.6
Sample B Male 0.8
Sample C Female 0.6
Sample D Female 0.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70720252 Antisense, RP_050426_03_A11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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