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RNF220
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.3 nTPM
HPA:53.3 nTPM
GTEx:46.4 nTPM
FANTOM5:609.7 Scaled Tags Per Million
Pig:135.6 nTPM
Mouse:87.3 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.4
1827 Male, age 72, unknown 54.8
2828 Female, age 72, unknown 52.4
2666 Male, age 74, left hemisphere 51.5
2411 Female, age 72, unknown 51.3
1870 Female, age 42, unknown 48.2
1830 Male, age 51, unknown 46.6
1833 Male, age 53, unknown 45.1
2586 Male, age 75, left hemisphere 40.3
2019 Male, age 18, unknown 40.1
2219 Male, age 76, both hemispheres 33.6
Dorsal raphe nucleus
nTPM: 28.5
2750 Male, age 76, both hemispheres 59.2
1828 Male, age 53, unknown 27.8
2016 Female, age 72, unknown 24.8
2047 Male, age 72, unknown 16.7
2298 Female, age 72, unknown 14.1
Inferior colliculus
nTPM: 27.4
1890 Male, age 53, unknown 29.8
2849 Male, age 72, unknown 29.8
1848 Female, age 42, unknown 26.6
2097 Female, age 72, unknown 23.2
Median raphe nucleus
nTPM: 27.7
2220 Male, age 76, midline 27.7
Pedunculopontine tegmental nucleus
nTPM: 39.4
2334 Male, age 80, both hemispheres 45.2
1921 Female, age 85, both hemispheres 36.8
2338 Male, age 61, both hemispheres 36.1
Periaquaductal grey, anterior
nTPM: 44.3
1947 Male, age 18, unknown 52.5
1795 Male, age 51, unknown 49.7
2502 Female, age 75, unknown 30.5
Periaquaductal grey, dorsal
nTPM: 20.5
2464 Female, age 72, unknown 31.4
1831 Male, age 72, unknown 27.2
2850 Male, age 76, both hemispheres 12.8
1840 Male, age 53, unknown 10.7
Periaquaductal grey, lateral
nTPM: 27.3
2053 Male, age 18, unknown 37.8
2272 Male, age 74, both hemispheres 29.2
2140 Male, age 76, both hemispheres 14.9
Pretectal area
nTPM: 39.9
1815 Male, age 53, unknown 55.4
2007 Male, age 72, unknown 50.1
1816 Male, age 51, unknown 48.1
1817 Female, age 42, unknown 43.0
2316 Male, age 76, right hemisphere 41.8
1944 Female, age 72, unknown 40.9
2407 Male, age 75, both hemispheres 40.8
2825 Male, age 18, unknown 38.5
2667 Female, age 75, unknown 36.0
2224 Female, age 72, unknown 22.1
2273 Male, age 74, both hemispheres 22.1
Red nucleus
nTPM: 53.3
2823 Male, age 76, right hemisphere 68.4
2588 Male, age 74, left hemisphere 67.9
2503 Female, age 72, unknown 58.3
1904 Male, age 53, unknown 56.7
1865 Male, age 51, unknown 54.3
2227 Male, age 72, unknown 51.0
2725 Female, age 75, unknown 50.1
2769 Male, age 72, unknown 49.5
2584 Male, age 75, left hemisphere 49.0
1821 Female, age 72, unknown 46.6
2785 Male, age 18, unknown 46.3
1954 Female, age 42, unknown 41.8
Substantia nigra
nTPM: 30.9
2583 Male, age 75, right hemisphere 48.6
1889 Female, age 72, unknown 43.6
2590 Female, age 75, unknown 39.5
2409 Female, age 72, unknown 35.4
1851 Male, age 51, unknown 29.5
1941 Male, age 53, unknown 28.4
2665 Male, age 74, both hemispheres 25.8
1916 Female, age 42, unknown 20.4
2699 Male, age 18, unknown 20.4
2241 Male, age 72, unknown 17.9
Superior colliculus
nTPM: 43.9
1913 Female, age 42, unknown 60.4
1895 Male, age 76, right hemisphere 52.3
2668 Female, age 75, unknown 52.1
1995 Male, age 72, unknown 46.7
2261 Male, age 18, unknown 45.8
1796 Male, age 53, unknown 45.5
2587 Male, age 74, left hemisphere 39.7
2087 Female, age 72, unknown 38.3
1839 Male, age 51, unknown 33.2
2664 Male, age 75, both hemispheres 24.7
Ventral tegmental area
nTPM: 34.3
2410 Female, age 72, unknown 45.6
2223 Female, age 72, unknown 39.0
2218 Male, age 76, both hemispheres 36.3
1942 Male, age 51, unknown 29.0
2021 Male, age 53, unknown 28.5
1915 Female, age 42, unknown 27.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.4
Samples: 139

Max nTPM: 319.6
Min nTPM: 9.0
Std nTPM: 34.2
Median nTPM: 36.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 319.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 138.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 136.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 125.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 113.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 112.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 98.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 96.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 93.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 91.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 90.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 609.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 609.7
FF:10158-103A5 76 years, female 609.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 135.6
Pig sample Sample description nTPM
Midbrain
nTPM: 135.6
Samples: 4

Max nTPM: 165.5
Min nTPM: 105.5
Sample A Female 158.1
Sample B Female 105.5
Sample C Male 165.5
Sample D Male 113.4
Periaqueductal gray
nTPM: 92.3
Samples: 3

Max nTPM: 95.5
Min nTPM: 88.8
Sample B Female 95.5
Sample C Male 92.6
Sample D Male 88.8
Substantia nigra
nTPM: 121.5
Samples: 4

Max nTPM: 152.0
Min nTPM: 88.4
Sample A Female 124.2
Sample B Female 88.4
Sample C Male 121.2
Sample D Male 152.0
Superior colliculi
nTPM: 119.1
Samples: 4

Max nTPM: 139.0
Min nTPM: 74.5
Sample A Female 126.3
Sample B Female 74.5
Sample C Male 136.5
Sample D Male 139.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 87.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.3
Samples: 4

Max nTPM: 89.6
Min nTPM: 85.2
Sample A Male 85.2
Sample B Male 86.5
Sample C Female 87.8
Sample D Female 89.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
71924364 Antisense, RP_050623_01_G04, Mouse strain C57BL/6J (56 days, male) 7.0
70528073 Antisense, RP_050623_01_G04, Mouse strain C57BL/6J (56 days, male) 4.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.