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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:145.6 nTPM
HPA:145.6 nTPM
GTEx:129.2 nTPM
FANTOM5:139.5 Scaled Tags Per Million
Pig:61.9 nTPM
Mouse:79.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 145.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.3
1830 Male, age 51, unknown 135.1
2411 Female, age 72, unknown 134.4
2019 Male, age 18, unknown 123.9
1870 Female, age 42, unknown 119.6
1833 Male, age 53, unknown 118.9
2828 Female, age 72, unknown 93.2
2666 Male, age 74, left hemisphere 91.7
2586 Male, age 75, left hemisphere 85.3
1827 Male, age 72, unknown 75.7
2219 Male, age 76, both hemispheres 75.0
Dorsal raphe nucleus
nTPM: 83.6
2750 Male, age 76, both hemispheres 139.7
1828 Male, age 53, unknown 80.2
2047 Male, age 72, unknown 72.0
2016 Female, age 72, unknown 70.4
2298 Female, age 72, unknown 55.7
Inferior colliculus
nTPM: 67.8
1890 Male, age 53, unknown 73.9
1848 Female, age 42, unknown 71.3
2849 Male, age 72, unknown 63.8
2097 Female, age 72, unknown 62.0
Median raphe nucleus
nTPM: 93.0
2220 Male, age 76, midline 93.0
Pedunculopontine tegmental nucleus
nTPM: 91.9
2334 Male, age 80, both hemispheres 110.9
1921 Female, age 85, both hemispheres 84.3
2338 Male, age 61, both hemispheres 80.6
Periaquaductal grey, anterior
nTPM: 74.8
2502 Female, age 75, unknown 81.0
1947 Male, age 18, unknown 78.9
1795 Male, age 51, unknown 64.5
Periaquaductal grey, dorsal
nTPM: 59.3
2464 Female, age 72, unknown 77.9
1831 Male, age 72, unknown 65.5
2850 Male, age 76, both hemispheres 49.7
1840 Male, age 53, unknown 44.3
Periaquaductal grey, lateral
nTPM: 68.0
2053 Male, age 18, unknown 73.6
2272 Male, age 74, both hemispheres 73.5
2140 Male, age 76, both hemispheres 56.9
Pretectal area
nTPM: 72.3
2316 Male, age 76, right hemisphere 108.2
1815 Male, age 53, unknown 87.1
2407 Male, age 75, both hemispheres 82.1
1817 Female, age 42, unknown 74.5
2825 Male, age 18, unknown 74.3
2007 Male, age 72, unknown 74.0
2273 Male, age 74, both hemispheres 66.8
2667 Female, age 75, unknown 65.8
2224 Female, age 72, unknown 60.8
1944 Female, age 72, unknown 51.5
1816 Male, age 51, unknown 50.2
Red nucleus
nTPM: 145.6
1904 Male, age 53, unknown 176.9
1865 Male, age 51, unknown 169.4
2823 Male, age 76, right hemisphere 161.1
2769 Male, age 72, unknown 159.5
2227 Male, age 72, unknown 155.9
1821 Female, age 72, unknown 152.8
2503 Female, age 72, unknown 148.7
2588 Male, age 74, left hemisphere 146.3
2785 Male, age 18, unknown 131.1
1954 Female, age 42, unknown 122.2
2584 Male, age 75, left hemisphere 114.8
2725 Female, age 75, unknown 108.4
Substantia nigra
nTPM: 84.9
2583 Male, age 75, right hemisphere 108.4
2590 Female, age 75, unknown 105.5
1851 Male, age 51, unknown 95.4
2409 Female, age 72, unknown 88.5
1889 Female, age 72, unknown 85.4
1941 Male, age 53, unknown 77.8
2699 Male, age 18, unknown 77.6
2665 Male, age 74, both hemispheres 74.7
2241 Male, age 72, unknown 69.9
1916 Female, age 42, unknown 65.8
Superior colliculus
nTPM: 84.6
1913 Female, age 42, unknown 126.7
1995 Male, age 72, unknown 107.2
2587 Male, age 74, left hemisphere 90.6
1839 Male, age 51, unknown 89.5
1895 Male, age 76, right hemisphere 88.8
2668 Female, age 75, unknown 83.1
1796 Male, age 53, unknown 72.5
2664 Male, age 75, both hemispheres 65.9
2261 Male, age 18, unknown 65.2
2087 Female, age 72, unknown 56.8
Ventral tegmental area
nTPM: 112.9
2223 Female, age 72, unknown 201.8
2410 Female, age 72, unknown 122.9
2218 Male, age 76, both hemispheres 95.3
1942 Male, age 51, unknown 94.9
2021 Male, age 53, unknown 89.3
1915 Female, age 42, unknown 73.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 129.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 129.2
Samples: 139

Max nTPM: 485.3
Min nTPM: 33.8
Std nTPM: 73.4
Median nTPM: 112.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 485.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 433.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 329.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 322.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 312.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 290.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 272.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 260.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 249.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 241.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 232.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.5
FF:10158-103A5 76 years, female 139.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.9
Pig sample Sample description nTPM
Midbrain
nTPM: 61.9
Samples: 4

Max nTPM: 146.0
Min nTPM: 29.0
Sample A Female 146.0
Sample B Female 40.4
Sample C Male 32.3
Sample D Male 29.0
Periaqueductal gray
nTPM: 32.8
Samples: 3

Max nTPM: 34.6
Min nTPM: 30.2
Sample B Female 33.7
Sample C Male 30.2
Sample D Male 34.6
Substantia nigra
nTPM: 52.6
Samples: 4

Max nTPM: 74.8
Min nTPM: 29.0
Sample A Female 54.4
Sample B Female 29.0
Sample C Male 52.0
Sample D Male 74.8
Superior colliculi
nTPM: 37.3
Samples: 4

Max nTPM: 46.6
Min nTPM: 19.1
Sample A Female 39.2
Sample B Female 19.1
Sample C Male 46.6
Sample D Male 44.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.3
Samples: 4

Max nTPM: 92.3
Min nTPM: 66.2
Sample A Male 68.8
Sample B Male 66.2
Sample C Female 92.3
Sample D Female 90.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
947 Antisense, RP_Baylor_103028, Mouse strain C57BL/6J (56 days, male) 0.2
945 Antisense, RP_Baylor_103028, Mouse strain C57BL/6J (56 days, male) 0.1
949 Sense, RPS_Baylor_37042, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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