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CYHR1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:60.3 nTPM
HPA:60.3 nTPM
GTEx:64.6 nTPM
FANTOM5:71.4 Scaled Tags Per Million
Pig:22.5 nTPM
Mouse:101.4 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA053653
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 60.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.7
2289 Male, age 61, right hemisphere 62.0
1857 Female, age 85, left hemisphere 60.8
2290 Female, age 72, unknown 60.7
1781 Male, age 74, unknown 59.8
1854 Male, age 80, left hemisphere 59.6
2481 Female, age 94, left hemisphere 59.4
2846 Female, age 79, unknown 57.8
2288 Male, age 75, left hemisphere 57.7
Claustrum
nTPM: 59.6
2645 Female, age 72, unknown 62.9
2491 Male, age 75, both hemispheres 62.2
2568 Male, age 61, both hemispheres 60.0
2198 Male, age 80, both hemispheres 59.9
2284 Female, age 91, both hemispheres 59.6
2292 Female, age 85, both hemispheres 59.3
1956 Male, age 74, unknown 57.9
2196 Female, age 79, unknown 57.9
2392 Female, age 94, both hemispheres 56.4
Globus pallidus, externus
nTPM: 59.5
2646 Male, age 61, right hemisphere 62.4
1996 Male, age 80, right hemisphere 61.0
2772 Female, age 79, unknown 59.9
2567 Female, age 72, unknown 58.0
2395 Male, age 75, both hemispheres 56.0
Globus pallidus, internus
nTPM: 58.4
2483 Female, age 94, right hemisphere 60.8
2037 Male, age 80, right hemisphere 59.3
2778 Female, age 91, both hemispheres 59.2
2111 Female, age 85, right hemisphere 58.0
2287 Male, age 75, right hemisphere 57.9
2566 Female, age 72, unknown 57.6
1818 Male, age 74, unknown 56.3
Nucleus accumbens
nTPM: 59.1
1806 Female, age 85, left hemisphere 62.4
1783 Male, age 74, unknown 61.6
2824 Male, age 61, right hemisphere 60.9
2732 Male, age 80, right hemisphere 60.0
1856 Female, age 91, right hemisphere 58.4
2286 Male, age 75, left hemisphere 58.4
2698 Female, age 72, unknown 57.2
2391 Female, age 94, left hemisphere 53.9
Nucleus basalis of Meynert
nTPM: 58.9
2569 Male, age 61, both hemispheres 62.9
2484 Female, age 94, left hemisphere 59.7
2393 Male, age 80, right hemisphere 57.3
2821 Male, age 75, both hemispheres 55.7
Nucleus of the diagonal band
nTPM: 60.3
1979 Male, age 74, unknown 62.3
2775 Male, age 80, right hemisphere 61.4
2195 Female, age 85, both hemispheres 59.8
2029 Male, age 61, right hemisphere 59.6
1812 Female, age 91, both hemispheres 58.1
Olfactory tubercle
nTPM: 59.4
2487 Female, age 94, left hemisphere 61.1
1998 Female, age 91, both hemispheres 61.0
1846 Male, age 80, right hemisphere 58.0
2856 Male, age 75, right hemisphere 57.2
Putamen
nTPM: 59.7
2647 Male, age 75, left hemisphere 62.3
2466 Female, age 79, unknown 61.0
2489 Female, age 72, unknown 60.6
1937 Female, age 91, right hemisphere 59.1
2482 Female, age 94, left hemisphere 59.1
1838 Male, age 80, right hemisphere 58.5
1829 Male, age 74, unknown 57.4
Septal nuclei
nTPM: 60.0
1960 Male, age 74, unknown 63.5
2059 Female, age 85, both hemispheres 63.3
2031 Female, age 72, unknown 62.6
2009 Female, age 91, both hemispheres 58.4
2394 Male, age 61, left hemisphere 58.3
2199 Male, age 80, right hemisphere 57.4
2629 Female, age 94, right hemisphere 56.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 64.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 59.9
Samples: 246

Max nTPM: 99.7
Min nTPM: 28.8
Std nTPM: 11.3
Median nTPM: 59.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 99.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 99.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 98.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 92.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 86.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 85.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 84.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 84.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 83.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 81.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 80.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 64.6
Samples: 246

Max nTPM: 136.3
Min nTPM: 28.5
Std nTPM: 15.9
Median nTPM: 62.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 136.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 113.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 108.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 107.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 106.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 104.6
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 100.6
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 99.1
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 98.7
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 96.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 96.7
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Brain - Putamen (basal ganglia)
Average nTPM: 62.5
Samples: 205

Max nTPM: 97.7
Min nTPM: 32.9
Std nTPM: 12.0
Median nTPM: 61.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 97.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 96.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 95.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 94.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 93.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 93.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 90.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 88.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 88.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 87.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 87.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.4
FF:10164-103B2 76 years, female 71.4
Globus pallidus
Scaled Tags Per Million: 47.9
FF:10161-103A8 76 years, female 57.2
FF:10175-103C4 60 years, female 38.6
Nucleus accumbens
Scaled Tags Per Million: 47.5
FF:10037-101F1 23-56 years, mixed 47.5
Putamen
Scaled Tags Per Million: 59.4
FF:10176-103C5 60 years, female 59.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.5
Pig sample Sample description nTPM
Caudate
nTPM: 22.4
Samples: 4

Max nTPM: 25.8
Min nTPM: 18.5
Sample A Female 18.5
Sample B Female 24.3
Sample C Male 25.8
Sample D Male 20.8
Putamen
nTPM: 22.5
Samples: 4

Max nTPM: 26.2
Min nTPM: 18.8
Sample A Female 21.4
Sample B Female 18.8
Sample C Male 23.4
Sample D Male 26.2
Septum
nTPM: 20.1
Samples: 4

Max nTPM: 21.0
Min nTPM: 18.4
Sample A Female 21.0
Sample B Female 20.7
Sample C Male 20.4
Sample D Male 18.4
Ventral pallidum
nTPM: 21.1
Samples: 4

Max nTPM: 23.5
Min nTPM: 17.3
Sample A Female 17.3
Sample B Female 21.9
Sample C Male 23.5
Sample D Male 21.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 101.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 101.4
Samples: 4

Max nTPM: 107.7
Min nTPM: 95.4
Sample A Male 97.7
Sample B Male 107.7
Sample C Female 95.4
Sample D Female 104.6
Septum
nTPM: 96.3
Samples: 4

Max nTPM: 97.3
Min nTPM: 95.3
Sample A Male 95.3
Sample B Male 97.3
Sample C Female 96.1
Sample D Female 96.5
Ventral forebrain
nTPM: 95.2
Samples: 4

Max nTPM: 98.9
Min nTPM: 91.8
Sample A Male 94.7
Sample B Male 91.8
Sample C Female 98.9
Sample D Female 95.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
71608263 Antisense, RP_050927_01_D05, Mouse strain C57BL/6J (56 days, male) 0.5
77414565 Antisense, RP_070205_01_H01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.3
71608263 Antisense, RP_050927_01_D05, Mouse strain C57BL/6J (56 days, male) 0.5
77414565 Antisense, RP_070205_01_H01, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.