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CYHR1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.9 nTPM
HPA:59.9 nTPM
GTEx:47.1 nTPM
FANTOM5:53.3 Scaled Tags Per Million
Pig:24.4 nTPM
Mouse:92.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.8
2586 Male, age 75, left hemisphere 68.6
2828 Female, age 72, unknown 60.2
2019 Male, age 18, unknown 59.9
2411 Female, age 72, unknown 58.8
1827 Male, age 72, unknown 58.3
1870 Female, age 42, unknown 57.3
1833 Male, age 53, unknown 56.8
2666 Male, age 74, left hemisphere 56.5
1830 Male, age 51, unknown 55.8
2219 Male, age 76, both hemispheres 55.6
Dorsal raphe nucleus
nTPM: 59.4
2298 Female, age 72, unknown 62.0
2047 Male, age 72, unknown 59.7
2016 Female, age 72, unknown 59.1
1828 Male, age 53, unknown 58.1
2750 Male, age 76, both hemispheres 57.9
Inferior colliculus
nTPM: 57.7
2097 Female, age 72, unknown 59.4
1848 Female, age 42, unknown 57.3
1890 Male, age 53, unknown 57.3
2849 Male, age 72, unknown 57.0
Median raphe nucleus
nTPM: 58.6
2220 Male, age 76, midline 58.6
Pedunculopontine tegmental nucleus
nTPM: 55.5
1921 Female, age 85, both hemispheres 57.6
2334 Male, age 80, both hemispheres 56.3
2338 Male, age 61, both hemispheres 52.6
Periaquaductal grey, anterior
nTPM: 59.9
1795 Male, age 51, unknown 62.0
2502 Female, age 75, unknown 59.7
1947 Male, age 18, unknown 58.1
Periaquaductal grey, dorsal
nTPM: 58.7
1840 Male, age 53, unknown 61.3
1831 Male, age 72, unknown 58.7
2464 Female, age 72, unknown 58.3
2850 Male, age 76, both hemispheres 56.6
Periaquaductal grey, lateral
nTPM: 57.8
2053 Male, age 18, unknown 58.0
2140 Male, age 76, both hemispheres 57.9
2272 Male, age 74, both hemispheres 57.7
Pretectal area
nTPM: 58.9
1816 Male, age 51, unknown 60.0
2273 Male, age 74, both hemispheres 59.9
2007 Male, age 72, unknown 59.7
2667 Female, age 75, unknown 59.7
2316 Male, age 76, right hemisphere 59.4
2407 Male, age 75, both hemispheres 59.0
1944 Female, age 72, unknown 58.2
2224 Female, age 72, unknown 58.0
2825 Male, age 18, unknown 57.9
1815 Male, age 53, unknown 57.8
1817 Female, age 42, unknown 57.7
Red nucleus
nTPM: 57.2
2227 Male, age 72, unknown 58.8
2503 Female, age 72, unknown 58.2
2769 Male, age 72, unknown 58.2
2584 Male, age 75, left hemisphere 57.9
1904 Male, age 53, unknown 57.7
2785 Male, age 18, unknown 57.7
1954 Female, age 42, unknown 57.5
2588 Male, age 74, left hemisphere 57.4
1821 Female, age 72, unknown 56.6
2725 Female, age 75, unknown 56.2
2823 Male, age 76, right hemisphere 55.4
1865 Male, age 51, unknown 54.8
Substantia nigra
nTPM: 56.9
2583 Male, age 75, right hemisphere 59.0
1851 Male, age 51, unknown 58.8
2665 Male, age 74, both hemispheres 58.3
1889 Female, age 72, unknown 58.1
1916 Female, age 42, unknown 58.0
2590 Female, age 75, unknown 56.9
2699 Male, age 18, unknown 56.4
1941 Male, age 53, unknown 56.3
2241 Male, age 72, unknown 54.9
2409 Female, age 72, unknown 52.6
Superior colliculus
nTPM: 58.7
2664 Male, age 75, both hemispheres 64.2
1796 Male, age 53, unknown 59.9
2261 Male, age 18, unknown 59.6
2087 Female, age 72, unknown 59.4
2668 Female, age 75, unknown 58.8
1839 Male, age 51, unknown 57.7
1995 Male, age 72, unknown 57.7
2587 Male, age 74, left hemisphere 57.2
1913 Female, age 42, unknown 56.7
1895 Male, age 76, right hemisphere 55.2
Ventral tegmental area
nTPM: 58.5
1942 Male, age 51, unknown 59.8
1915 Female, age 42, unknown 59.3
2021 Male, age 53, unknown 59.1
2218 Male, age 76, both hemispheres 58.1
2410 Female, age 72, unknown 58.1
2223 Female, age 72, unknown 56.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.1
Samples: 139

Max nTPM: 88.9
Min nTPM: 22.9
Std nTPM: 10.2
Median nTPM: 46.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 88.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 88.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 76.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 73.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 66.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 66.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 64.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 64.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 63.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 62.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 62.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.3
FF:10158-103A5 76 years, female 53.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.4
Pig sample Sample description nTPM
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 27.7
Min nTPM: 20.3
Sample A Female 27.7
Sample B Female 20.3
Sample C Male 23.9
Sample D Male 24.0
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 22.8
Min nTPM: 20.4
Sample B Female 20.6
Sample C Male 22.8
Sample D Male 20.4
Substantia nigra
nTPM: 22.5
Samples: 4

Max nTPM: 27.4
Min nTPM: 20.2
Sample A Female 27.4
Sample B Female 20.2
Sample C Male 20.8
Sample D Male 21.5
Superior colliculi
nTPM: 24.5
Samples: 4

Max nTPM: 27.2
Min nTPM: 21.7
Sample A Female 27.2
Sample B Female 23.8
Sample C Male 21.7
Sample D Male 25.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.3
Samples: 4

Max nTPM: 96.9
Min nTPM: 87.7
Sample A Male 96.8
Sample B Male 87.7
Sample C Female 87.8
Sample D Female 96.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71608263 Antisense, RP_050927_01_D05, Mouse strain C57BL/6J (56 days, male) 0.6
77414565 Antisense, RP_070205_01_H01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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