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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.6 nTPM
HPA:44.6 nTPM
GTEx:63.4 nTPM
FANTOM5:84.1 Scaled Tags Per Million
Pig:40.7 nTPM
Mouse:45.3 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.6
2481 Female, age 94, left hemisphere 47.2
1854 Male, age 80, left hemisphere 45.9
1857 Female, age 85, left hemisphere 45.4
2846 Female, age 79, unknown 45.3
2289 Male, age 61, right hemisphere 44.2
2290 Female, age 72, unknown 44.1
2288 Male, age 75, left hemisphere 43.0
1781 Male, age 74, unknown 41.4
Claustrum
nTPM: 39.0
2392 Female, age 94, both hemispheres 40.5
2491 Male, age 75, both hemispheres 39.7
1956 Male, age 74, unknown 39.6
2196 Female, age 79, unknown 39.3
2198 Male, age 80, both hemispheres 39.2
2284 Female, age 91, both hemispheres 38.7
2568 Male, age 61, both hemispheres 38.6
2645 Female, age 72, unknown 38.2
2292 Female, age 85, both hemispheres 37.4
Globus pallidus, externus
nTPM: 41.4
1996 Male, age 80, right hemisphere 44.0
2772 Female, age 79, unknown 43.8
2395 Male, age 75, both hemispheres 41.6
2646 Male, age 61, right hemisphere 38.9
2567 Female, age 72, unknown 38.5
Globus pallidus, internus
nTPM: 41.5
2483 Female, age 94, right hemisphere 44.6
2037 Male, age 80, right hemisphere 43.4
1818 Male, age 74, unknown 42.4
2778 Female, age 91, both hemispheres 41.3
2287 Male, age 75, right hemisphere 40.9
2111 Female, age 85, right hemisphere 39.1
2566 Female, age 72, unknown 38.6
Nucleus accumbens
nTPM: 44.6
1856 Female, age 91, right hemisphere 48.5
2286 Male, age 75, left hemisphere 45.3
2732 Male, age 80, right hemisphere 45.1
2824 Male, age 61, right hemisphere 45.0
1806 Female, age 85, left hemisphere 43.8
2698 Female, age 72, unknown 43.7
1783 Male, age 74, unknown 43.0
2391 Female, age 94, left hemisphere 42.2
Nucleus basalis of Meynert
nTPM: 40.8
2393 Male, age 80, right hemisphere 43.4
2484 Female, age 94, left hemisphere 40.4
2821 Male, age 75, both hemispheres 39.9
2569 Male, age 61, both hemispheres 39.6
Nucleus of the diagonal band
nTPM: 41.8
1812 Female, age 91, both hemispheres 44.3
2775 Male, age 80, right hemisphere 41.8
2029 Male, age 61, right hemisphere 41.4
1979 Male, age 74, unknown 41.1
2195 Female, age 85, both hemispheres 40.3
Olfactory tubercle
nTPM: 40.9
1846 Male, age 80, right hemisphere 42.0
2856 Male, age 75, right hemisphere 41.3
1998 Female, age 91, both hemispheres 40.8
2487 Female, age 94, left hemisphere 39.6
Putamen
nTPM: 43.3
1838 Male, age 80, right hemisphere 45.3
2482 Female, age 94, left hemisphere 45.1
1937 Female, age 91, right hemisphere 44.2
2466 Female, age 79, unknown 44.1
1829 Male, age 74, unknown 42.7
2489 Female, age 72, unknown 40.8
2647 Male, age 75, left hemisphere 40.5
Septal nuclei
nTPM: 42.4
2009 Female, age 91, both hemispheres 45.3
2629 Female, age 94, right hemisphere 44.6
2199 Male, age 80, right hemisphere 42.7
2031 Female, age 72, unknown 42.5
1960 Male, age 74, unknown 41.2
2059 Female, age 85, both hemispheres 40.1
2394 Male, age 61, left hemisphere 40.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 63.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 59.8
Samples: 246

Max nTPM: 148.2
Min nTPM: 27.2
Std nTPM: 19.5
Median nTPM: 56.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 148.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 134.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 128.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 121.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 109.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 107.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 107.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 106.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 105.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 101.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 101.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 63.4
Samples: 246

Max nTPM: 172.1
Min nTPM: 29.4
Std nTPM: 18.9
Median nTPM: 60.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 172.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 133.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 131.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 131.7
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 125.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 123.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 107.1
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 105.7
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 104.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 102.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 98.7
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Brain - Putamen (basal ganglia)
Average nTPM: 54.6
Samples: 205

Max nTPM: 108.1
Min nTPM: 27.1
Std nTPM: 15.9
Median nTPM: 52.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 108.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 103.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 95.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 91.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 89.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 88.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 87.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 87.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 87.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 86.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 86.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 74.5
FF:10164-103B2 76 years, female 74.5
Globus pallidus
Scaled Tags Per Million: 57.3
FF:10175-103C4 60 years, female 85.2
FF:10161-103A8 76 years, female 29.4
Nucleus accumbens
Scaled Tags Per Million: 65.1
FF:10037-101F1 23-56 years, mixed 65.1
Putamen
Scaled Tags Per Million: 84.1
FF:10176-103C5 60 years, female 84.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 40.7
Pig sample Sample description nTPM
Caudate
nTPM: 39.9
Samples: 4

Max nTPM: 45.3
Min nTPM: 36.0
Sample A Female 45.3
Sample B Female 40.2
Sample C Male 37.9
Sample D Male 36.0
Putamen
nTPM: 39.4
Samples: 4

Max nTPM: 53.0
Min nTPM: 30.6
Sample A Female 39.9
Sample B Female 30.6
Sample C Male 53.0
Sample D Male 33.9
Septum
nTPM: 40.7
Samples: 4

Max nTPM: 47.2
Min nTPM: 33.9
Sample A Female 47.2
Sample B Female 33.9
Sample C Male 39.3
Sample D Male 42.5
Ventral pallidum
nTPM: 29.7
Samples: 4

Max nTPM: 37.3
Min nTPM: 23.8
Sample A Female 37.3
Sample B Female 28.2
Sample C Male 23.8
Sample D Male 29.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 45.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.4
Samples: 4

Max nTPM: 39.2
Min nTPM: 36.1
Sample A Male 39.2
Sample B Male 37.2
Sample C Female 37.2
Sample D Female 36.1
Septum
nTPM: 45.3
Samples: 4

Max nTPM: 49.1
Min nTPM: 41.5
Sample A Male 41.5
Sample B Male 44.8
Sample C Female 49.1
Sample D Female 45.8
Ventral forebrain
nTPM: 31.3
Samples: 4

Max nTPM: 33.4
Min nTPM: 29.2
Sample A Male 30.6
Sample B Male 29.2
Sample C Female 32.1
Sample D Female 33.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71210514 Antisense, RP_050810_04_C12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71210514 Antisense, RP_050810_04_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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