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COL4A5
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.4 nTPM
HPA:57.4 nTPM
GTEx:15.4 nTPM
FANTOM5:93.3 Scaled Tags Per Million
Pig:3.0 nTPM
Mouse:3.2 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 57.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.1
2288 Male, age 75, left hemisphere 32.0
2481 Female, age 94, left hemisphere 24.0
2289 Male, age 61, right hemisphere 21.9
1854 Male, age 80, left hemisphere 19.9
2290 Female, age 72, unknown 19.4
2846 Female, age 79, unknown 19.4
1781 Male, age 74, unknown 18.1
1857 Female, age 85, left hemisphere 14.2
Claustrum
nTPM: 30.6
2292 Female, age 85, both hemispheres 47.3
1956 Male, age 74, unknown 38.7
2392 Female, age 94, both hemispheres 37.5
2196 Female, age 79, unknown 29.3
2491 Male, age 75, both hemispheres 27.6
2198 Male, age 80, both hemispheres 25.4
2284 Female, age 91, both hemispheres 24.9
2568 Male, age 61, both hemispheres 24.2
2645 Female, age 72, unknown 20.4
Globus pallidus, externus
nTPM: 49.4
1996 Male, age 80, right hemisphere 56.4
2567 Female, age 72, unknown 52.6
2646 Male, age 61, right hemisphere 50.4
2772 Female, age 79, unknown 45.8
2395 Male, age 75, both hemispheres 41.7
Globus pallidus, internus
nTPM: 57.4
2111 Female, age 85, right hemisphere 93.8
2778 Female, age 91, both hemispheres 67.9
2287 Male, age 75, right hemisphere 56.3
2566 Female, age 72, unknown 55.4
2037 Male, age 80, right hemisphere 50.5
1818 Male, age 74, unknown 46.0
2483 Female, age 94, right hemisphere 31.8
Nucleus accumbens
nTPM: 29.4
2391 Female, age 94, left hemisphere 54.8
2732 Male, age 80, right hemisphere 34.3
2698 Female, age 72, unknown 32.8
2286 Male, age 75, left hemisphere 31.7
2824 Male, age 61, right hemisphere 25.2
1806 Female, age 85, left hemisphere 20.6
1783 Male, age 74, unknown 20.5
1856 Female, age 91, right hemisphere 15.2
Nucleus basalis of Meynert
nTPM: 29.7
2569 Male, age 61, both hemispheres 40.6
2821 Male, age 75, both hemispheres 29.4
2393 Male, age 80, right hemisphere 25.6
2484 Female, age 94, left hemisphere 23.0
Nucleus of the diagonal band
nTPM: 14.3
1812 Female, age 91, both hemispheres 16.4
2029 Male, age 61, right hemisphere 15.5
1979 Male, age 74, unknown 15.3
2775 Male, age 80, right hemisphere 12.6
2195 Female, age 85, both hemispheres 11.5
Olfactory tubercle
nTPM: 15.6
1998 Female, age 91, both hemispheres 16.2
2856 Male, age 75, right hemisphere 16.2
1846 Male, age 80, right hemisphere 15.2
2487 Female, age 94, left hemisphere 14.8
Putamen
nTPM: 24.7
2482 Female, age 94, left hemisphere 31.2
1829 Male, age 74, unknown 29.0
2647 Male, age 75, left hemisphere 26.8
2489 Female, age 72, unknown 26.7
1937 Female, age 91, right hemisphere 24.8
2466 Female, age 79, unknown 20.3
1838 Male, age 80, right hemisphere 13.7
Septal nuclei
nTPM: 19.4
2394 Male, age 61, left hemisphere 31.9
2199 Male, age 80, right hemisphere 24.5
2059 Female, age 85, both hemispheres 19.1
2629 Female, age 94, right hemisphere 18.0
2009 Female, age 91, both hemispheres 17.0
2031 Female, age 72, unknown 13.8
1960 Male, age 74, unknown 11.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.9
Samples: 246

Max nTPM: 50.8
Min nTPM: 1.9
Std nTPM: 6.7
Median nTPM: 11.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 50.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 50.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 39.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 35.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 32.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 28.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 26.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 25.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 25.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 25.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 25.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.9
Samples: 246

Max nTPM: 56.4
Min nTPM: 1.7
Std nTPM: 7.0
Median nTPM: 6.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 56.4
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 46.0
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 39.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 38.5
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 32.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 29.5
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 27.7
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 26.8
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 25.0
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 24.8
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 24.1
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Brain - Putamen (basal ganglia)
Average nTPM: 15.4
Samples: 205

Max nTPM: 83.6
Min nTPM: 3.9
Std nTPM: 8.5
Median nTPM: 14.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 83.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 50.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 44.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 36.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 36.4
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 33.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 33.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 30.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 30.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 30.4
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 30.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.3
FF:10164-103B2 76 years, female 27.3
Globus pallidus
Scaled Tags Per Million: 93.3
FF:10161-103A8 76 years, female 101.5
FF:10175-103C4 60 years, female 85.2
Nucleus accumbens
Scaled Tags Per Million: 43.9
FF:10037-101F1 23-56 years, mixed 43.9
Putamen
Scaled Tags Per Million: 22.7
FF:10176-103C5 60 years, female 22.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.0
Pig sample Sample description nTPM
Caudate
nTPM: 2.6
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.4
Sample A Female 3.2
Sample B Female 2.4
Sample C Male 2.4
Sample D Male 2.5
Putamen
nTPM: 2.3
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.1
Sample A Female 2.7
Sample B Female 2.1
Sample C Male 2.2
Sample D Male 2.1
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.2
Sample A Female 2.5
Sample B Female 2.2
Sample C Male 4.6
Sample D Male 2.8
Ventral pallidum
nTPM: 2.5
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.1
Sample A Female 2.4
Sample B Female 2.4
Sample C Male 3.1
Sample D Male 2.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.3
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.0
Sample A Male 1.0
Sample B Male 1.1
Sample C Female 1.9
Sample D Female 1.3
Septum
nTPM: 2.1
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.8
Sample A Male 2.6
Sample B Male 1.8
Sample C Female 2.0
Sample D Female 1.9
Ventral forebrain
nTPM: 3.2
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.4
Sample A Male 2.6
Sample B Male 3.7
Sample C Female 4.1
Sample D Female 2.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
73992932 Antisense, RP_051214_03_C10, Mouse strain C57BL/6J (56 days, male) 0.1
70720249 Antisense, RP_050426_03_A06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
73992932 Antisense, RP_051214_03_C10, Mouse strain C57BL/6J (56 days, male) 0.0
70720249 Antisense, RP_050426_03_A06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.