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COL4A5
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.0 nTPM
HPA:27.0 nTPM
GTEx:22.7 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:4.1 nTPM
Mouse:2.3 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.0
Sample id Sample description nTPM
Hippocampus
nTPM: 21.1
1911 Female, age 85, right hemisphere 27.7
2529 Female, age 94, left hemisphere 23.7
1898 Male, age 80, left hemisphere 20.9
2621 Female, age 67, right hemisphere 18.7
2148 Female, age 91, left hemisphere 18.0
1855 Male, age 76, left hemisphere 17.9
Dentate gyrus
nTPM: 21.3
2530 Female, age 94, left hemisphere 29.5
2528 Male, age 74, both hemispheres 24.4
2010 Male, age 76, both hemispheres 21.5
2246 Female, age 85, both hemispheres 20.2
2531 Female, age 67, both hemispheres 16.5
1927 Female, age 91, both hemispheres 15.7
Entorhinal gyrus
nTPM: 21.6
2117 Female, age 91, right hemisphere 32.9
2764 Male, age 80, right hemisphere 26.3
1938 Female, age 85, left hemisphere 20.3
2686 Male, age 75, right hemisphere 17.2
1787 Male, age 76, left hemisphere 16.5
2613 Female, age 94, left hemisphere 16.4
Hippocampus, CA1
nTPM: 19.2
2082 Female, age 91, right hemisphere 23.9
1873 Female, age 85, both hemispheres 21.9
2527 Male, age 74, both hemispheres 20.8
2749 Male, age 80, left hemisphere 16.6
2045 Male, age 76, both hemispheres 12.6
Hippocampus, CA2
nTPM: 22.7
2249 Male, age 74, both hemispheres 28.4
1963 Male, age 80, left hemisphere 26.9
2113 Female, age 91, right hemisphere 23.6
2437 Female, age 94, left hemisphere 21.5
1940 Female, age 85, left hemisphere 21.2
1892 Male, age 76, both hemispheres 14.7
Hippocampus, CA3
nTPM: 17.8
1891 Female, age 85, both hemispheres 31.1
2436 Male, age 74, both hemispheres 19.4
1867 Male, age 76, both hemispheres 17.7
2137 Male, age 80, left hemisphere 14.6
2620 Female, age 94, left hemisphere 13.4
2861 Female, age 67, both hemispheres 10.8
Parahippocampal cortex
nTPM: 18.4
2692 Male, age 74, both hemispheres 23.5
2532 Female, age 72, left hemisphere 22.5
1990 Female, age 91, right hemisphere 22.3
2018 Male, age 76, both hemispheres 20.1
1933 Female, age 85, both hemispheres 19.5
1850 Male, age 80, both hemispheres 19.0
2245 Female, age 91, both hemispheres 18.0
2693 Female, age 94, both hemispheres 14.3
2250 Female, age 67, right hemisphere 13.9
2622 Female, age 67, right hemisphere 11.2
Perirhinal gyrus
nTPM: 14.4
2521 Female, age 94, right hemisphere 16.6
1794 Male, age 80, right hemisphere 15.0
2848 Male, age 76, right hemisphere 14.6
1847 Female, age 91, left hemisphere 13.3
1841 Female, age 85, right hemisphere 12.6
Subiculum
nTPM: 27.0
2042 Male, age 76, both hemispheres 34.9
1901 Male, age 80, both hemispheres 32.8
1977 Female, age 85, both hemispheres 27.6
2729 Female, age 91, right hemisphere 22.7
2438 Female, age 94, left hemisphere 22.3
2619 Male, age 74, both hemispheres 21.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.7
Samples: 197

Max nTPM: 91.8
Min nTPM: 1.9
Std nTPM: 16.1
Median nTPM: 17.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 91.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 74.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 72.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 70.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 67.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 64.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 61.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 58.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 54.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 54.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 51.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.7
FF:10153-102I9 76 years, female 52.3
FF:10169-103B7 60 years, female 25.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 2.2
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 2.2
Sample C Male 2.5
Sample D Male 2.3
Entorhinal cortex
nTPM: 3.1
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.3
Sample A Female 4.6
Sample B Female 2.3
Sample C Male 3.1
Sample D Male 2.5
Subiculum
nTPM: 4.1
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.4
Sample A Female 3.6
Sample B Female 3.4
Sample C Male 4.9
Sample D Male 4.6
Ventral hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.4
Sample A Female 3.7
Sample B Female 3.5
Sample C Male 4.7
Sample D Male 2.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 2.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.3
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.9
Sample A Male 1.9
Sample B Male 2.0
Sample C Female 3.0
Sample D Female 2.4
Hippocampal formation
nTPM: 2.1
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.5
Sample A Male 1.5
Sample B Male 1.7
Sample C Female 2.2
Sample D Female 2.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
73992932 Antisense, RP_051214_03_C10, Mouse strain C57BL/6J (56 days, male) 0.1
70720249 Antisense, RP_050426_03_A06, Mouse strain C57BL/6J (56 days, male) 0.1

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