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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:233.6 nTPM
HPA:233.6 nTPM
GTEx:161.5 nTPM
FANTOM5:139.9 Scaled Tags Per Million
Pig:188.4 nTPM
Mouse:424.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 233.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 136.0
1827 Male, age 72, unknown 155.4
2411 Female, age 72, unknown 147.8
2019 Male, age 18, unknown 147.2
1870 Female, age 42, unknown 141.9
2828 Female, age 72, unknown 140.0
2219 Male, age 76, both hemispheres 136.3
2586 Male, age 75, left hemisphere 131.1
1833 Male, age 53, unknown 127.4
1830 Male, age 51, unknown 122.9
2666 Male, age 74, left hemisphere 110.3
Dorsal raphe nucleus
nTPM: 179.4
2298 Female, age 72, unknown 257.7
2047 Male, age 72, unknown 167.4
2016 Female, age 72, unknown 165.8
1828 Male, age 53, unknown 161.5
2750 Male, age 76, both hemispheres 144.4
Inferior colliculus
nTPM: 129.7
2849 Male, age 72, unknown 138.3
2097 Female, age 72, unknown 135.2
1848 Female, age 42, unknown 127.5
1890 Male, age 53, unknown 117.9
Median raphe nucleus
nTPM: 167.8
2220 Male, age 76, midline 167.8
Pedunculopontine tegmental nucleus
nTPM: 153.5
2334 Male, age 80, both hemispheres 175.2
1921 Female, age 85, both hemispheres 152.1
2338 Male, age 61, both hemispheres 133.3
Periaquaductal grey, anterior
nTPM: 177.1
1795 Male, age 51, unknown 204.3
1947 Male, age 18, unknown 175.4
2502 Female, age 75, unknown 151.5
Periaquaductal grey, dorsal
nTPM: 157.4
2850 Male, age 76, both hemispheres 178.2
1840 Male, age 53, unknown 175.0
2464 Female, age 72, unknown 144.4
1831 Male, age 72, unknown 131.9
Periaquaductal grey, lateral
nTPM: 233.6
2272 Male, age 74, both hemispheres 386.9
2140 Male, age 76, both hemispheres 173.4
2053 Male, age 18, unknown 140.4
Pretectal area
nTPM: 172.4
2273 Male, age 74, both hemispheres 343.4
2224 Female, age 72, unknown 198.4
2667 Female, age 75, unknown 171.4
2825 Male, age 18, unknown 160.6
1816 Male, age 51, unknown 159.4
2007 Male, age 72, unknown 157.7
1944 Female, age 72, unknown 156.6
2407 Male, age 75, both hemispheres 143.3
1815 Male, age 53, unknown 142.2
1817 Female, age 42, unknown 139.1
2316 Male, age 76, right hemisphere 124.6
Red nucleus
nTPM: 127.5
2785 Male, age 18, unknown 145.6
1954 Female, age 42, unknown 141.8
2725 Female, age 75, unknown 140.4
1821 Female, age 72, unknown 134.8
2227 Male, age 72, unknown 131.3
2769 Male, age 72, unknown 131.0
1904 Male, age 53, unknown 124.8
1865 Male, age 51, unknown 122.0
2503 Female, age 72, unknown 120.6
2823 Male, age 76, right hemisphere 118.3
2588 Male, age 74, left hemisphere 109.8
2584 Male, age 75, left hemisphere 109.4
Substantia nigra
nTPM: 148.1
1916 Female, age 42, unknown 184.7
1941 Male, age 53, unknown 174.7
1851 Male, age 51, unknown 161.2
2241 Male, age 72, unknown 150.0
1889 Female, age 72, unknown 149.2
2590 Female, age 75, unknown 145.2
2699 Male, age 18, unknown 141.2
2409 Female, age 72, unknown 132.3
2665 Male, age 74, both hemispheres 126.4
2583 Male, age 75, right hemisphere 116.3
Superior colliculus
nTPM: 142.9
2587 Male, age 74, left hemisphere 167.3
2261 Male, age 18, unknown 162.8
1796 Male, age 53, unknown 160.2
2087 Female, age 72, unknown 147.7
2664 Male, age 75, both hemispheres 142.6
2668 Female, age 75, unknown 138.2
1839 Male, age 51, unknown 135.9
1995 Male, age 72, unknown 129.0
1895 Male, age 76, right hemisphere 123.7
1913 Female, age 42, unknown 121.4
Ventral tegmental area
nTPM: 149.3
1915 Female, age 42, unknown 159.6
2410 Female, age 72, unknown 155.9
2218 Male, age 76, both hemispheres 154.0
2021 Male, age 53, unknown 146.0
1942 Male, age 51, unknown 145.6
2223 Female, age 72, unknown 134.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 161.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 161.5
Samples: 139

Max nTPM: 426.0
Min nTPM: 50.4
Std nTPM: 70.1
Median nTPM: 148.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 426.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 397.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 389.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 313.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 309.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 300.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 292.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 291.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 291.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 289.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 275.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.9
FF:10158-103A5 76 years, female 139.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 188.4
Pig sample Sample description nTPM
Midbrain
nTPM: 136.2
Samples: 4

Max nTPM: 160.5
Min nTPM: 124.2
Sample A Female 124.2
Sample B Female 134.3
Sample C Male 160.5
Sample D Male 125.8
Periaqueductal gray
nTPM: 188.4
Samples: 3

Max nTPM: 236.7
Min nTPM: 156.1
Sample B Female 156.1
Sample C Male 236.7
Sample D Male 172.4
Substantia nigra
nTPM: 154.1
Samples: 4

Max nTPM: 250.7
Min nTPM: 80.8
Sample A Female 250.7
Sample B Female 101.7
Sample C Male 183.1
Sample D Male 80.8
Superior colliculi
nTPM: 137.2
Samples: 4

Max nTPM: 164.9
Min nTPM: 104.7
Sample A Female 164.9
Sample B Female 104.7
Sample C Male 153.6
Sample D Male 125.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 424.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 424.1
Samples: 4

Max nTPM: 447.6
Min nTPM: 388.2
Sample A Male 432.7
Sample B Male 428.0
Sample C Female 388.2
Sample D Female 447.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.