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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:23.0 nTPM
HPA:23.0 nTPM
GTEx:13.2 nTPM
FANTOM5:0.4 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:14.5 nTPM
Allen mouse:6.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA055015
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.0
Sample id Sample description nTPM
Hippocampus
nTPM: 13.2
1898 Male, age 80, left hemisphere 18.5
2621 Female, age 67, right hemisphere 14.5
1855 Male, age 76, left hemisphere 13.7
2148 Female, age 91, left hemisphere 13.5
1911 Female, age 85, right hemisphere 10.9
2529 Female, age 94, left hemisphere 8.0
Dentate gyrus
nTPM: 14.0
1927 Female, age 91, both hemispheres 20.3
2530 Female, age 94, left hemisphere 15.6
2010 Male, age 76, both hemispheres 14.4
2528 Male, age 74, both hemispheres 11.8
2531 Female, age 67, both hemispheres 11.0
2246 Female, age 85, both hemispheres 10.7
Entorhinal gyrus
nTPM: 12.2
2613 Female, age 94, left hemisphere 18.3
1938 Female, age 85, left hemisphere 16.3
2764 Male, age 80, right hemisphere 12.4
2686 Male, age 75, right hemisphere 12.2
1787 Male, age 76, left hemisphere 8.4
2117 Female, age 91, right hemisphere 5.8
Hippocampus, CA1
nTPM: 15.2
2749 Male, age 80, left hemisphere 24.9
1873 Female, age 85, both hemispheres 17.8
2045 Male, age 76, both hemispheres 13.6
2527 Male, age 74, both hemispheres 9.9
2082 Female, age 91, right hemisphere 9.7
Hippocampus, CA2
nTPM: 14.1
1963 Male, age 80, left hemisphere 22.5
2249 Male, age 74, both hemispheres 17.8
1892 Male, age 76, both hemispheres 16.7
2437 Female, age 94, left hemisphere 12.6
2113 Female, age 91, right hemisphere 9.5
1940 Female, age 85, left hemisphere 5.4
Hippocampus, CA3
nTPM: 23.0
2436 Male, age 74, both hemispheres 67.7
2137 Male, age 80, left hemisphere 20.3
2620 Female, age 94, left hemisphere 15.5
2861 Female, age 67, both hemispheres 14.6
1867 Male, age 76, both hemispheres 10.2
1891 Female, age 85, both hemispheres 9.5
Parahippocampal cortex
nTPM: 12.4
1850 Male, age 80, both hemispheres 15.6
1933 Female, age 85, both hemispheres 15.1
2250 Female, age 67, right hemisphere 14.1
1990 Female, age 91, right hemisphere 13.5
2693 Female, age 94, both hemispheres 13.1
2245 Female, age 91, both hemispheres 12.2
2622 Female, age 67, right hemisphere 11.5
2532 Female, age 72, left hemisphere 10.2
2018 Male, age 76, both hemispheres 10.0
2692 Male, age 74, both hemispheres 8.6
Perirhinal gyrus
nTPM: 14.9
1847 Female, age 91, left hemisphere 21.9
1841 Female, age 85, right hemisphere 14.1
2521 Female, age 94, right hemisphere 14.1
1794 Male, age 80, right hemisphere 12.4
2848 Male, age 76, right hemisphere 11.8
Subiculum
nTPM: 7.0
1977 Female, age 85, both hemispheres 11.7
1901 Male, age 80, both hemispheres 9.1
2729 Female, age 91, right hemisphere 7.0
2619 Male, age 74, both hemispheres 6.6
2042 Male, age 76, both hemispheres 4.7
2438 Female, age 94, left hemisphere 3.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.2
Samples: 197

Max nTPM: 37.0
Min nTPM: 3.4
Std nTPM: 6.5
Median nTPM: 11.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 37.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 34.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 31.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 30.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 28.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 27.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 27.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 25.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 25.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 24.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 24.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 0.4
FF:10153-102I9 76 years, female 0.8
FF:10169-103B7 60 years, female 0.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 23.5
Samples: 4

Max nTPM: 25.3
Min nTPM: 22.6
Sample A Female 23.1
Sample B Female 23.1
Sample C Male 22.6
Sample D Male 25.3
Entorhinal cortex
nTPM: 29.2
Samples: 4

Max nTPM: 32.7
Min nTPM: 26.0
Sample A Female 26.0
Sample B Female 32.7
Sample C Male 28.8
Sample D Male 29.1
Subiculum
nTPM: 23.1
Samples: 4

Max nTPM: 26.8
Min nTPM: 21.3
Sample A Female 26.8
Sample B Female 22.9
Sample C Male 21.3
Sample D Male 21.5
Ventral hippocampus
nTPM: 22.4
Samples: 4

Max nTPM: 22.7
Min nTPM: 21.8
Sample A Female 22.7
Sample B Female 22.4
Sample C Male 21.8
Sample D Male 22.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.4
Samples: 4

Max nTPM: 9.9
Min nTPM: 8.9
Sample A Male 9.3
Sample B Male 8.9
Sample C Female 9.4
Sample D Female 9.9
Hippocampal formation
nTPM: 14.5
Samples: 4

Max nTPM: 17.7
Min nTPM: 11.0
Sample A Male 12.3
Sample B Male 17.7
Sample C Female 16.8
Sample D Female 11.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.3
69529173 Antisense, RP_050421_03_F11, Mouse strain C57BL/6J (56 days, male) 9.3
74881879 Antisense, RP_060315_04_D08, Mouse strain C57BL/6J (56 days, male) 5.4
70300186 Antisense, RP_050602_04_H11, Mouse strain C57BL/6J (56 days, male) 4.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.