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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.1 nTPM
HPA:8.1 nTPM
GTEx:9.0 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:29.7 nTPM
Mouse:10.7 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.6
2219 Male, age 76, both hemispheres 7.8
2411 Female, age 72, unknown 7.2
2666 Male, age 74, left hemisphere 7.1
1827 Male, age 72, unknown 6.5
2019 Male, age 18, unknown 6.2
2586 Male, age 75, left hemisphere 6.0
1833 Male, age 53, unknown 4.2
1870 Female, age 42, unknown 4.1
2828 Female, age 72, unknown 3.9
1830 Male, age 51, unknown 3.2
Dorsal raphe nucleus
nTPM: 6.4
2047 Male, age 72, unknown 8.3
2298 Female, age 72, unknown 8.2
1828 Male, age 53, unknown 6.5
2016 Female, age 72, unknown 4.4
2750 Male, age 76, both hemispheres 4.4
Inferior colliculus
nTPM: 8.1
1848 Female, age 42, unknown 9.7
2849 Male, age 72, unknown 9.5
2097 Female, age 72, unknown 8.8
1890 Male, age 53, unknown 4.4
Median raphe nucleus
nTPM: 4.3
2220 Male, age 76, midline 4.3
Pedunculopontine tegmental nucleus
nTPM: 7.1
1921 Female, age 85, both hemispheres 8.3
2334 Male, age 80, both hemispheres 6.9
2338 Male, age 61, both hemispheres 6.0
Periaquaductal grey, anterior
nTPM: 7.5
2502 Female, age 75, unknown 11.3
1947 Male, age 18, unknown 6.5
1795 Male, age 51, unknown 4.9
Periaquaductal grey, dorsal
nTPM: 6.4
1840 Male, age 53, unknown 10.6
2464 Female, age 72, unknown 8.2
1831 Male, age 72, unknown 3.8
2850 Male, age 76, both hemispheres 3.1
Periaquaductal grey, lateral
nTPM: 3.7
2053 Male, age 18, unknown 4.1
2140 Male, age 76, both hemispheres 3.8
2272 Male, age 74, both hemispheres 3.0
Pretectal area
nTPM: 6.0
1816 Male, age 51, unknown 10.4
1944 Female, age 72, unknown 9.1
2007 Male, age 72, unknown 8.1
2224 Female, age 72, unknown 7.3
1817 Female, age 42, unknown 7.2
2825 Male, age 18, unknown 5.6
1815 Male, age 53, unknown 5.1
2273 Male, age 74, both hemispheres 4.8
2667 Female, age 75, unknown 3.9
2407 Male, age 75, both hemispheres 2.8
2316 Male, age 76, right hemisphere 1.3
Red nucleus
nTPM: 2.1
1821 Female, age 72, unknown 4.4
2588 Male, age 74, left hemisphere 3.6
2785 Male, age 18, unknown 3.4
2584 Male, age 75, left hemisphere 2.9
2503 Female, age 72, unknown 2.2
2227 Male, age 72, unknown 2.1
2769 Male, age 72, unknown 2.0
2725 Female, age 75, unknown 1.9
1954 Female, age 42, unknown 1.2
2823 Male, age 76, right hemisphere 1.2
1904 Male, age 53, unknown 0.5
1865 Male, age 51, unknown 0.2
Substantia nigra
nTPM: 7.9
1941 Male, age 53, unknown 12.3
2665 Male, age 74, both hemispheres 11.2
2241 Male, age 72, unknown 10.8
1916 Female, age 42, unknown 9.8
1851 Male, age 51, unknown 9.4
1889 Female, age 72, unknown 8.3
2409 Female, age 72, unknown 5.4
2699 Male, age 18, unknown 4.5
2583 Male, age 75, right hemisphere 4.3
2590 Female, age 75, unknown 2.8
Superior colliculus
nTPM: 5.7
2668 Female, age 75, unknown 9.7
1839 Male, age 51, unknown 8.0
1895 Male, age 76, right hemisphere 7.6
2087 Female, age 72, unknown 7.6
2261 Male, age 18, unknown 6.8
2587 Male, age 74, left hemisphere 6.8
1796 Male, age 53, unknown 6.1
2664 Male, age 75, both hemispheres 3.2
1913 Female, age 42, unknown 0.9
1995 Male, age 72, unknown 0.0
Ventral tegmental area
nTPM: 6.7
2410 Female, age 72, unknown 9.5
2218 Male, age 76, both hemispheres 8.4
1915 Female, age 42, unknown 7.9
1942 Male, age 51, unknown 5.9
2021 Male, age 53, unknown 5.6
2223 Female, age 72, unknown 3.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.0
Samples: 139

Max nTPM: 32.4
Min nTPM: 3.2
Std nTPM: 4.6
Median nTPM: 7.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 32.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 25.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 20.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 20.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 18.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 18.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 16.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 16.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 16.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 16.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.7
Pig sample Sample description nTPM
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 29.6
Min nTPM: 26.5
Sample A Female 26.5
Sample B Female 29.4
Sample C Male 27.1
Sample D Male 29.6
Periaqueductal gray
nTPM: 25.5
Samples: 3

Max nTPM: 27.1
Min nTPM: 24.4
Sample B Female 25.0
Sample C Male 24.4
Sample D Male 27.1
Substantia nigra
nTPM: 29.7
Samples: 4

Max nTPM: 32.4
Min nTPM: 25.9
Sample A Female 32.4
Sample B Female 25.9
Sample C Male 31.1
Sample D Male 29.4
Superior colliculi
nTPM: 27.5
Samples: 4

Max nTPM: 31.1
Min nTPM: 26.2
Sample A Female 26.2
Sample B Female 31.1
Sample C Male 26.3
Sample D Male 26.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.6
Sample A Male 9.6
Sample B Male 12.1
Sample C Female 10.4
Sample D Female 10.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
69529173 Antisense, RP_050421_03_F11, Mouse strain C57BL/6J (56 days, male) 6.8
74881879 Antisense, RP_060315_04_D08, Mouse strain C57BL/6J (56 days, male) 3.8
70300186 Antisense, RP_050602_04_H11, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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