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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.3 nTPM
HPA:10.3 nTPM
GTEx:1.1 nTPM
FANTOM5:7.3 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:46.2 nTPM
Allen mouse:8.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 10.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.1
2846 Female, age 79, unknown 12.4
2288 Male, age 75, left hemisphere 6.5
2290 Female, age 72, unknown 6.3
1854 Male, age 80, left hemisphere 4.8
1857 Female, age 85, left hemisphere 3.5
2289 Male, age 61, right hemisphere 3.5
2481 Female, age 94, left hemisphere 2.4
1781 Male, age 74, unknown 1.7
Claustrum
nTPM: 0.8
2392 Female, age 94, both hemispheres 3.3
2568 Male, age 61, both hemispheres 1.8
2198 Male, age 80, both hemispheres 1.0
2284 Female, age 91, both hemispheres 1.0
2491 Male, age 75, both hemispheres 0.2
2196 Female, age 79, unknown 0.1
1956 Male, age 74, unknown 0.0
2292 Female, age 85, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.3
2646 Male, age 61, right hemisphere 1.2
2395 Male, age 75, both hemispheres 0.6
1996 Male, age 80, right hemisphere 0.0
2567 Female, age 72, unknown 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.3
2483 Female, age 94, right hemisphere 1.6
2566 Female, age 72, unknown 0.9
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 3.4
1856 Female, age 91, right hemisphere 5.6
2286 Male, age 75, left hemisphere 4.8
2698 Female, age 72, unknown 3.4
1783 Male, age 74, unknown 3.3
1806 Female, age 85, left hemisphere 2.9
2732 Male, age 80, right hemisphere 2.8
2824 Male, age 61, right hemisphere 2.6
2391 Female, age 94, left hemisphere 1.7
Nucleus basalis of Meynert
nTPM: 9.1
2393 Male, age 80, right hemisphere 16.8
2821 Male, age 75, both hemispheres 9.4
2484 Female, age 94, left hemisphere 9.2
2569 Male, age 61, both hemispheres 0.8
Nucleus of the diagonal band
nTPM: 2.5
1979 Male, age 74, unknown 10.3
1812 Female, age 91, both hemispheres 1.3
2029 Male, age 61, right hemisphere 0.4
2195 Female, age 85, both hemispheres 0.3
2775 Male, age 80, right hemisphere 0.2
Olfactory tubercle
nTPM: 1.5
2487 Female, age 94, left hemisphere 3.4
1846 Male, age 80, right hemisphere 1.0
1998 Female, age 91, both hemispheres 0.7
2856 Male, age 75, right hemisphere 0.7
Putamen
nTPM: 10.3
1838 Male, age 80, right hemisphere 15.2
2466 Female, age 79, unknown 14.9
1829 Male, age 74, unknown 14.3
2489 Female, age 72, unknown 11.2
1937 Female, age 91, right hemisphere 7.9
2482 Female, age 94, left hemisphere 4.5
2647 Male, age 75, left hemisphere 3.8
Septal nuclei
nTPM: 3.6
2394 Male, age 61, left hemisphere 10.7
2199 Male, age 80, right hemisphere 8.2
2009 Female, age 91, both hemispheres 2.9
2031 Female, age 72, unknown 1.2
2059 Female, age 85, both hemispheres 1.2
2629 Female, age 94, right hemisphere 1.0
1960 Male, age 74, unknown 0.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.9
Samples: 246

Max nTPM: 6.4
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 0.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 6.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 5.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 5.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 4.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 3.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 3.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 3.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 2.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 2.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.7
Samples: 246

Max nTPM: 4.8
Min nTPM: 0.0
Std nTPM: 0.7
Median nTPM: 0.5
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 4.8
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 4.4
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 3.2
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 3.2
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 3.2
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 3.1
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 2.9
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 2.8
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 2.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 2.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 2.2
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Brain - Putamen (basal ganglia)
Average nTPM: 1.1
Samples: 205

Max nTPM: 6.9
Min nTPM: 0.0
Std nTPM: 1.0
Median nTPM: 0.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 6.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 5.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 5.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 4.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 4.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 3.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 3.6
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 3.4
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 3.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 3.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 3.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.4
FF:10164-103B2 76 years, female 2.4
Globus pallidus
Scaled Tags Per Million: 4.0
FF:10175-103C4 60 years, female 7.1
FF:10161-103A8 76 years, female 1.0
Nucleus accumbens
Scaled Tags Per Million: 7.3
FF:10037-101F1 23-56 years, mixed 7.3
Putamen
Scaled Tags Per Million: 6.5
FF:10176-103C5 60 years, female 6.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.7
Pig sample Sample description nTPM
Caudate
nTPM: 7.2
Samples: 4

Max nTPM: 10.8
Min nTPM: 4.1
Sample A Female 10.8
Sample B Female 7.1
Sample C Male 6.6
Sample D Male 4.1
Putamen
nTPM: 5.4
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.2
Sample A Female 7.1
Sample B Female 5.1
Sample C Male 5.0
Sample D Male 4.2
Septum
nTPM: 16.7
Samples: 4

Max nTPM: 20.4
Min nTPM: 10.7
Sample A Female 19.1
Sample B Female 16.4
Sample C Male 20.4
Sample D Male 10.7
Ventral pallidum
nTPM: 16.4
Samples: 4

Max nTPM: 24.5
Min nTPM: 9.3
Sample A Female 14.3
Sample B Female 17.4
Sample C Male 24.5
Sample D Male 9.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 46.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.2
Samples: 4

Max nTPM: 10.7
Min nTPM: 9.8
Sample A Male 9.8
Sample B Male 9.8
Sample C Female 10.7
Sample D Female 10.5
Septum
nTPM: 46.2
Samples: 4

Max nTPM: 53.8
Min nTPM: 33.9
Sample A Male 33.9
Sample B Male 53.8
Sample C Female 47.1
Sample D Female 49.8
Ventral forebrain
nTPM: 14.6
Samples: 4

Max nTPM: 16.5
Min nTPM: 12.1
Sample A Male 14.1
Sample B Male 16.5
Sample C Female 12.1
Sample D Female 15.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.0
70305622 Antisense, RP_050609_04_F09, Mouse strain C57BL/6J (56 days, male) 8.0
71924301 Antisense, RP_050609_04_F09, Mouse strain C57BL/6J (56 days, male) 5.4
Pallidum
Expression energy: 8.1
71924301 Antisense, RP_050609_04_F09, Mouse strain C57BL/6J (56 days, male) 8.1
70305622 Antisense, RP_050609_04_F09, Mouse strain C57BL/6J (56 days, male) 7.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.