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COL25A1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.8 nTPM
HPA:17.8 nTPM
GTEx:0.9 nTPM
FANTOM5:8.6 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:15.5 nTPM
Allen mouse:9.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.8
Sample id Sample description nTPM
Hippocampus
nTPM: 8.4
2621 Female, age 67, right hemisphere 18.6
2148 Female, age 91, left hemisphere 10.2
1855 Male, age 76, left hemisphere 7.8
1911 Female, age 85, right hemisphere 7.4
1898 Male, age 80, left hemisphere 3.3
2529 Female, age 94, left hemisphere 3.3
Dentate gyrus
nTPM: 14.9
1927 Female, age 91, both hemispheres 21.3
2531 Female, age 67, both hemispheres 16.9
2010 Male, age 76, both hemispheres 16.5
2246 Female, age 85, both hemispheres 16.4
2528 Male, age 74, both hemispheres 10.7
2530 Female, age 94, left hemisphere 7.8
Entorhinal gyrus
nTPM: 0.7
2613 Female, age 94, left hemisphere 2.4
1787 Male, age 76, left hemisphere 1.5
1938 Female, age 85, left hemisphere 0.2
2117 Female, age 91, right hemisphere 0.0
2686 Male, age 75, right hemisphere 0.0
2764 Male, age 80, right hemisphere 0.0
Hippocampus, CA1
nTPM: 17.8
2749 Male, age 80, left hemisphere 29.8
2045 Male, age 76, both hemispheres 24.0
1873 Female, age 85, both hemispheres 15.5
2527 Male, age 74, both hemispheres 10.4
2082 Female, age 91, right hemisphere 9.6
Hippocampus, CA2
nTPM: 5.9
1892 Male, age 76, both hemispheres 21.7
1963 Male, age 80, left hemisphere 9.0
2249 Male, age 74, both hemispheres 3.4
2437 Female, age 94, left hemisphere 1.0
2113 Female, age 91, right hemisphere 0.3
1940 Female, age 85, left hemisphere 0.0
Hippocampus, CA3
nTPM: 14.4
2620 Female, age 94, left hemisphere 30.8
2137 Male, age 80, left hemisphere 17.6
2861 Female, age 67, both hemispheres 14.7
1867 Male, age 76, both hemispheres 13.5
1891 Female, age 85, both hemispheres 6.6
2436 Male, age 74, both hemispheres 3.4
Parahippocampal cortex
nTPM: 1.3
2018 Male, age 76, both hemispheres 3.6
2250 Female, age 67, right hemisphere 3.1
1933 Female, age 85, both hemispheres 1.5
1990 Female, age 91, right hemisphere 1.4
2245 Female, age 91, both hemispheres 1.2
2532 Female, age 72, left hemisphere 0.9
2693 Female, age 94, both hemispheres 0.9
2692 Male, age 74, both hemispheres 0.2
1850 Male, age 80, both hemispheres 0.0
2622 Female, age 67, right hemisphere 0.0
Perirhinal gyrus
nTPM: 0.9
2521 Female, age 94, right hemisphere 1.6
1847 Female, age 91, left hemisphere 1.5
1794 Male, age 80, right hemisphere 0.7
1841 Female, age 85, right hemisphere 0.5
2848 Male, age 76, right hemisphere 0.5
Subiculum
nTPM: 2.8
1977 Female, age 85, both hemispheres 7.3
1901 Male, age 80, both hemispheres 5.1
2042 Male, age 76, both hemispheres 2.5
2729 Female, age 91, right hemisphere 1.9
2438 Female, age 94, left hemisphere 0.2
2619 Male, age 74, both hemispheres 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 0.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 0.9
Samples: 197

Max nTPM: 8.3
Min nTPM: 0.0
Std nTPM: 1.3
Median nTPM: 0.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 8.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 7.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 6.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 6.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 5.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 5.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 4.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 4.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 4.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 4.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 3.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 8.6
FF:10169-103B7 60 years, female 11.5
FF:10153-102I9 76 years, female 5.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.6
Samples: 4

Max nTPM: 29.3
Min nTPM: 21.2
Sample A Female 29.3
Sample B Female 27.5
Sample C Male 21.2
Sample D Male 24.2
Entorhinal cortex
nTPM: 17.1
Samples: 4

Max nTPM: 18.3
Min nTPM: 15.1
Sample A Female 18.2
Sample B Female 15.1
Sample C Male 18.3
Sample D Male 16.8
Subiculum
nTPM: 10.1
Samples: 4

Max nTPM: 14.6
Min nTPM: 6.9
Sample A Female 9.2
Sample B Female 6.9
Sample C Male 14.6
Sample D Male 9.8
Ventral hippocampus
nTPM: 23.7
Samples: 4

Max nTPM: 36.9
Min nTPM: 16.9
Sample A Female 16.9
Sample B Female 20.6
Sample C Male 20.2
Sample D Male 36.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.5
Samples: 4

Max nTPM: 10.7
Min nTPM: 6.2
Sample A Male 7.6
Sample B Male 6.2
Sample C Female 10.7
Sample D Female 9.5
Hippocampal formation
nTPM: 15.6
Samples: 4

Max nTPM: 18.6
Min nTPM: 11.5
Sample A Male 11.5
Sample B Male 18.6
Sample C Female 18.6
Sample D Female 13.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.8
70305622 Antisense, RP_050609_04_F09, Mouse strain C57BL/6J (56 days, male) 9.8
71924301 Antisense, RP_050609_04_F09, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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