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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:442.5 nTPM
HPA:442.5 nTPM
GTEx:961.4 nTPM
FANTOM5:238.2 Scaled Tags Per Million
Pig:47.9 nTPM
Mouse:576.6 nTPM
Allen mouse:13.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 442.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 431.0
1870 Female, age 42, unknown 441.9
2666 Male, age 74, left hemisphere 438.5
2828 Female, age 72, unknown 437.8
1827 Male, age 72, unknown 435.1
1830 Male, age 51, unknown 430.8
2019 Male, age 18, unknown 430.4
1833 Male, age 53, unknown 429.8
2411 Female, age 72, unknown 428.8
2219 Male, age 76, both hemispheres 422.7
2586 Male, age 75, left hemisphere 414.1
Dorsal raphe nucleus
nTPM: 436.0
2298 Female, age 72, unknown 449.0
2016 Female, age 72, unknown 441.2
1828 Male, age 53, unknown 433.7
2750 Male, age 76, both hemispheres 431.7
2047 Male, age 72, unknown 424.3
Inferior colliculus
nTPM: 436.8
2097 Female, age 72, unknown 446.1
2849 Male, age 72, unknown 437.8
1890 Male, age 53, unknown 436.4
1848 Female, age 42, unknown 426.9
Median raphe nucleus
nTPM: 433.6
2220 Male, age 76, midline 433.6
Pedunculopontine tegmental nucleus
nTPM: 442.5
2338 Male, age 61, both hemispheres 449.7
2334 Male, age 80, both hemispheres 445.3
1921 Female, age 85, both hemispheres 432.4
Periaquaductal grey, anterior
nTPM: 433.2
2502 Female, age 75, unknown 441.4
1795 Male, age 51, unknown 429.4
1947 Male, age 18, unknown 428.8
Periaquaductal grey, dorsal
nTPM: 426.9
1840 Male, age 53, unknown 435.0
2850 Male, age 76, both hemispheres 428.5
1831 Male, age 72, unknown 427.4
2464 Female, age 72, unknown 416.7
Periaquaductal grey, lateral
nTPM: 434.0
2053 Male, age 18, unknown 441.2
2272 Male, age 74, both hemispheres 431.9
2140 Male, age 76, both hemispheres 429.0
Pretectal area
nTPM: 436.2
1817 Female, age 42, unknown 443.8
2407 Male, age 75, both hemispheres 441.8
2825 Male, age 18, unknown 439.9
1816 Male, age 51, unknown 439.1
2224 Female, age 72, unknown 437.3
1815 Male, age 53, unknown 435.6
2316 Male, age 76, right hemisphere 434.3
1944 Female, age 72, unknown 433.8
2007 Male, age 72, unknown 433.8
2273 Male, age 74, both hemispheres 431.9
2667 Female, age 75, unknown 426.7
Red nucleus
nTPM: 440.3
2503 Female, age 72, unknown 457.5
2725 Female, age 75, unknown 455.0
1821 Female, age 72, unknown 451.9
2584 Male, age 75, left hemisphere 445.6
1865 Male, age 51, unknown 442.8
1904 Male, age 53, unknown 437.7
2769 Male, age 72, unknown 437.6
2227 Male, age 72, unknown 434.0
2785 Male, age 18, unknown 433.3
2823 Male, age 76, right hemisphere 433.0
1954 Female, age 42, unknown 432.3
2588 Male, age 74, left hemisphere 423.2
Substantia nigra
nTPM: 442.3
2409 Female, age 72, unknown 456.1
2241 Male, age 72, unknown 455.7
2665 Male, age 74, both hemispheres 455.1
2699 Male, age 18, unknown 449.3
1851 Male, age 51, unknown 443.6
1889 Female, age 72, unknown 442.7
2590 Female, age 75, unknown 437.6
1941 Male, age 53, unknown 431.3
1916 Female, age 42, unknown 431.2
2583 Male, age 75, right hemisphere 420.4
Superior colliculus
nTPM: 435.5
2587 Male, age 74, left hemisphere 464.0
1913 Female, age 42, unknown 444.3
1796 Male, age 53, unknown 440.1
1995 Male, age 72, unknown 438.2
1839 Male, age 51, unknown 433.5
1895 Male, age 76, right hemisphere 433.3
2261 Male, age 18, unknown 428.5
2668 Female, age 75, unknown 427.1
2087 Female, age 72, unknown 423.4
2664 Male, age 75, both hemispheres 422.7
Ventral tegmental area
nTPM: 439.1
2223 Female, age 72, unknown 450.4
1915 Female, age 42, unknown 449.2
2021 Male, age 53, unknown 440.8
1942 Male, age 51, unknown 436.3
2410 Female, age 72, unknown 431.2
2218 Male, age 76, both hemispheres 426.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 961.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 961.4
Samples: 139

Max nTPM: 2730.8
Min nTPM: 503.1
Std nTPM: 317.2
Median nTPM: 897.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2730.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1872.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1835.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1779.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1605.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1517.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1512.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1468.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1464.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1435.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1393.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 238.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 238.2
FF:10158-103A5 76 years, female 238.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.9
Pig sample Sample description nTPM
Midbrain
nTPM: 45.0
Samples: 4

Max nTPM: 55.3
Min nTPM: 37.6
Sample A Female 55.3
Sample B Female 47.7
Sample C Male 37.6
Sample D Male 39.2
Periaqueductal gray
nTPM: 41.0
Samples: 3

Max nTPM: 43.4
Min nTPM: 39.2
Sample B Female 40.5
Sample C Male 43.4
Sample D Male 39.2
Substantia nigra
nTPM: 46.3
Samples: 4

Max nTPM: 57.2
Min nTPM: 38.5
Sample A Female 57.2
Sample B Female 49.9
Sample C Male 39.6
Sample D Male 38.5
Superior colliculi
nTPM: 47.9
Samples: 4

Max nTPM: 54.8
Min nTPM: 43.5
Sample A Female 54.8
Sample B Female 49.8
Sample C Male 43.5
Sample D Male 43.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 576.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 576.6
Samples: 4

Max nTPM: 589.7
Min nTPM: 551.2
Sample A Male 578.0
Sample B Male 589.7
Sample C Female 551.2
Sample D Female 587.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.7
69170150 Antisense, RP_050321_04_F12, Mouse strain C57BL/6J (56 days, male) 13.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.