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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:455.9 nTPM
HPA:455.9 nTPM
GTEx:804.8 nTPM
FANTOM5:286.2 Scaled Tags Per Million
Pig:42.7 nTPM
Mouse:592.7 nTPM
Allen mouse:13.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 455.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 439.0
2846 Female, age 79, unknown 469.0
1854 Male, age 80, left hemisphere 442.8
2290 Female, age 72, unknown 442.6
1857 Female, age 85, left hemisphere 439.3
2481 Female, age 94, left hemisphere 437.5
1781 Male, age 74, unknown 437.3
2288 Male, age 75, left hemisphere 434.9
2289 Male, age 61, right hemisphere 408.9
Claustrum
nTPM: 419.7
2196 Female, age 79, unknown 449.9
2198 Male, age 80, both hemispheres 429.9
2491 Male, age 75, both hemispheres 429.8
2392 Female, age 94, both hemispheres 428.1
1956 Male, age 74, unknown 427.0
2292 Female, age 85, both hemispheres 414.9
2284 Female, age 91, both hemispheres 401.8
2568 Male, age 61, both hemispheres 400.5
2645 Female, age 72, unknown 395.2
Globus pallidus, externus
nTPM: 449.4
2772 Female, age 79, unknown 480.9
1996 Male, age 80, right hemisphere 473.9
2395 Male, age 75, both hemispheres 455.1
2646 Male, age 61, right hemisphere 419.2
2567 Female, age 72, unknown 417.9
Globus pallidus, internus
nTPM: 455.9
2287 Male, age 75, right hemisphere 494.1
2483 Female, age 94, right hemisphere 477.8
2037 Male, age 80, right hemisphere 458.7
2778 Female, age 91, both hemispheres 455.4
1818 Male, age 74, unknown 440.5
2111 Female, age 85, right hemisphere 436.3
2566 Female, age 72, unknown 428.5
Nucleus accumbens
nTPM: 441.3
2698 Female, age 72, unknown 471.7
1806 Female, age 85, left hemisphere 447.5
1783 Male, age 74, unknown 444.4
1856 Female, age 91, right hemisphere 440.2
2286 Male, age 75, left hemisphere 439.6
2391 Female, age 94, left hemisphere 434.1
2732 Male, age 80, right hemisphere 429.2
2824 Male, age 61, right hemisphere 423.9
Nucleus basalis of Meynert
nTPM: 434.5
2821 Male, age 75, both hemispheres 453.9
2393 Male, age 80, right hemisphere 438.7
2484 Female, age 94, left hemisphere 429.4
2569 Male, age 61, both hemispheres 416.0
Nucleus of the diagonal band
nTPM: 433.1
1812 Female, age 91, both hemispheres 451.6
2775 Male, age 80, right hemisphere 436.3
1979 Male, age 74, unknown 429.5
2195 Female, age 85, both hemispheres 425.7
2029 Male, age 61, right hemisphere 422.4
Olfactory tubercle
nTPM: 419.5
1846 Male, age 80, right hemisphere 436.1
1998 Female, age 91, both hemispheres 417.7
2487 Female, age 94, left hemisphere 413.8
2856 Male, age 75, right hemisphere 410.5
Putamen
nTPM: 436.8
2466 Female, age 79, unknown 452.0
1829 Male, age 74, unknown 448.0
1838 Male, age 80, right hemisphere 444.4
1937 Female, age 91, right hemisphere 441.5
2482 Female, age 94, left hemisphere 438.6
2647 Male, age 75, left hemisphere 422.6
2489 Female, age 72, unknown 410.3
Septal nuclei
nTPM: 428.6
2031 Female, age 72, unknown 447.2
2629 Female, age 94, right hemisphere 439.0
1960 Male, age 74, unknown 434.8
2199 Male, age 80, right hemisphere 423.9
2059 Female, age 85, both hemispheres 423.7
2009 Female, age 91, both hemispheres 422.3
2394 Male, age 61, left hemisphere 409.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 804.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 682.1
Samples: 246

Max nTPM: 1451.9
Min nTPM: 414.5
Std nTPM: 164.9
Median nTPM: 652.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1451.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1289.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1227.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1148.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1130.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1127.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1125.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1088.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1067.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1059.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1054.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 804.8
Samples: 246

Max nTPM: 2222.3
Min nTPM: 444.5
Std nTPM: 215.6
Median nTPM: 770.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 2222.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 1670.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 1637.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 1637.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 1511.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 1363.1
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 1283.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 1268.4
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 1260.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 1224.8
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 1217.7
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Brain - Putamen (basal ganglia)
Average nTPM: 738.1
Samples: 205

Max nTPM: 1473.6
Min nTPM: 402.1
Std nTPM: 172.5
Median nTPM: 707.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 1473.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1460.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1196.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 1185.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1154.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1083.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1081.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 1054.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 1048.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1047.9
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 1047.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 286.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 229.1
FF:10164-103B2 76 years, female 229.1
Globus pallidus
Scaled Tags Per Million: 286.2
FF:10175-103C4 60 years, female 342.5
FF:10161-103A8 76 years, female 229.8
Nucleus accumbens
Scaled Tags Per Million: 162.2
FF:10037-101F1 23-56 years, mixed 162.2
Putamen
Scaled Tags Per Million: 268.9
FF:10176-103C5 60 years, female 268.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.7
Pig sample Sample description nTPM
Caudate
nTPM: 35.6
Samples: 4

Max nTPM: 38.8
Min nTPM: 32.0
Sample A Female 38.8
Sample B Female 34.2
Sample C Male 37.2
Sample D Male 32.0
Putamen
nTPM: 41.4
Samples: 4

Max nTPM: 48.0
Min nTPM: 33.1
Sample A Female 48.0
Sample B Female 33.1
Sample C Male 47.3
Sample D Male 37.3
Septum
nTPM: 42.7
Samples: 4

Max nTPM: 50.5
Min nTPM: 37.1
Sample A Female 50.5
Sample B Female 40.3
Sample C Male 42.8
Sample D Male 37.1
Ventral pallidum
nTPM: 38.4
Samples: 4

Max nTPM: 43.1
Min nTPM: 35.1
Sample A Female 37.2
Sample B Female 43.1
Sample C Male 35.1
Sample D Male 38.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 592.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 520.7
Samples: 4

Max nTPM: 534.2
Min nTPM: 511.4
Sample A Male 521.2
Sample B Male 516.1
Sample C Female 511.4
Sample D Female 534.2
Septum
nTPM: 592.7
Samples: 4

Max nTPM: 661.7
Min nTPM: 540.1
Sample A Male 540.1
Sample B Male 661.7
Sample C Female 606.3
Sample D Female 562.7
Ventral forebrain
nTPM: 498.4
Samples: 4

Max nTPM: 558.1
Min nTPM: 469.9
Sample A Male 484.3
Sample B Male 481.1
Sample C Female 558.1
Sample D Female 469.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.1
69170150 Antisense, RP_050321_04_F12, Mouse strain C57BL/6J (56 days, male) 13.1
Pallidum
Expression energy: 13.6
69170150 Antisense, RP_050321_04_F12, Mouse strain C57BL/6J (56 days, male) 13.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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