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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:981.1 nTPM
HPA:981.1 nTPM
GTEx:795.7 nTPM
FANTOM5:264.1 Scaled Tags Per Million
Pig:50.8 nTPM
Mouse:87.6 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 981.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 951.5
1857 Female, age 85, left hemisphere 971.1
1854 Male, age 80, left hemisphere 968.4
2846 Female, age 79, unknown 968.3
2290 Female, age 72, unknown 964.3
2481 Female, age 94, left hemisphere 952.9
1781 Male, age 74, unknown 947.4
2288 Male, age 75, left hemisphere 926.8
2289 Male, age 61, right hemisphere 912.4
Claustrum
nTPM: 926.9
2491 Male, age 75, both hemispheres 960.4
2196 Female, age 79, unknown 942.4
2392 Female, age 94, both hemispheres 940.2
2198 Male, age 80, both hemispheres 932.7
1956 Male, age 74, unknown 924.5
2292 Female, age 85, both hemispheres 918.9
2568 Male, age 61, both hemispheres 909.5
2645 Female, age 72, unknown 907.6
2284 Female, age 91, both hemispheres 906.1
Globus pallidus, externus
nTPM: 981.1
1996 Male, age 80, right hemisphere 1038.7
2772 Female, age 79, unknown 1014.5
2395 Male, age 75, both hemispheres 966.3
2567 Female, age 72, unknown 948.6
2646 Male, age 61, right hemisphere 937.4
Globus pallidus, internus
nTPM: 975.3
2037 Male, age 80, right hemisphere 1020.0
2483 Female, age 94, right hemisphere 998.7
2287 Male, age 75, right hemisphere 987.9
2778 Female, age 91, both hemispheres 972.1
1818 Male, age 74, unknown 963.6
2566 Female, age 72, unknown 942.6
2111 Female, age 85, right hemisphere 942.5
Nucleus accumbens
nTPM: 958.8
1806 Female, age 85, left hemisphere 977.7
1783 Male, age 74, unknown 969.0
1856 Female, age 91, right hemisphere 964.8
2698 Female, age 72, unknown 962.3
2824 Male, age 61, right hemisphere 958.5
2286 Male, age 75, left hemisphere 952.5
2391 Female, age 94, left hemisphere 949.5
2732 Male, age 80, right hemisphere 935.8
Nucleus basalis of Meynert
nTPM: 951.4
2393 Male, age 80, right hemisphere 963.3
2821 Male, age 75, both hemispheres 952.5
2484 Female, age 94, left hemisphere 948.3
2569 Male, age 61, both hemispheres 941.6
Nucleus of the diagonal band
nTPM: 939.3
1812 Female, age 91, both hemispheres 959.8
2775 Male, age 80, right hemisphere 945.9
1979 Male, age 74, unknown 938.1
2029 Male, age 61, right hemisphere 931.6
2195 Female, age 85, both hemispheres 921.3
Olfactory tubercle
nTPM: 926.6
1846 Male, age 80, right hemisphere 944.9
1998 Female, age 91, both hemispheres 933.3
2856 Male, age 75, right hemisphere 915.8
2487 Female, age 94, left hemisphere 912.5
Putamen
nTPM: 950.1
2466 Female, age 79, unknown 968.1
1838 Male, age 80, right hemisphere 966.9
1937 Female, age 91, right hemisphere 961.5
1829 Male, age 74, unknown 951.4
2482 Female, age 94, left hemisphere 946.3
2647 Male, age 75, left hemisphere 934.3
2489 Female, age 72, unknown 922.6
Septal nuclei
nTPM: 935.5
2031 Female, age 72, unknown 960.7
1960 Male, age 74, unknown 949.0
2059 Female, age 85, both hemispheres 936.6
2009 Female, age 91, both hemispheres 935.7
2199 Male, age 80, right hemisphere 931.5
2629 Female, age 94, right hemisphere 919.1
2394 Male, age 61, left hemisphere 915.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 795.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 636.9
Samples: 246

Max nTPM: 1573.1
Min nTPM: 274.4
Std nTPM: 198.2
Median nTPM: 598.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1573.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1412.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1336.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1215.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1145.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1109.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1106.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1103.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1096.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1091.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1088.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 795.7
Samples: 246

Max nTPM: 2239.5
Min nTPM: 305.8
Std nTPM: 260.9
Median nTPM: 755.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 2239.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 1873.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 1670.1
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 1556.1
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 1546.9
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 1530.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 1488.8
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 1463.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 1427.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 1409.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 1394.2
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Brain - Putamen (basal ganglia)
Average nTPM: 689.2
Samples: 205

Max nTPM: 1533.2
Min nTPM: 252.1
Std nTPM: 200.2
Median nTPM: 674.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1533.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1327.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1321.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 1296.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1196.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1191.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1190.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1158.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1151.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1146.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1064.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 264.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 194.7
FF:10164-103B2 76 years, female 194.7
Globus pallidus
Scaled Tags Per Million: 247.1
FF:10175-103C4 60 years, female 306.2
FF:10161-103A8 76 years, female 188.0
Nucleus accumbens
Scaled Tags Per Million: 134.2
FF:10037-101F1 23-56 years, mixed 134.2
Putamen
Scaled Tags Per Million: 264.1
FF:10176-103C5 60 years, female 264.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 50.8
Pig sample Sample description nTPM
Caudate
nTPM: 43.1
Samples: 4

Max nTPM: 45.7
Min nTPM: 40.0
Sample A Female 43.3
Sample B Female 43.4
Sample C Male 45.7
Sample D Male 40.0
Putamen
nTPM: 50.8
Samples: 4

Max nTPM: 68.2
Min nTPM: 42.5
Sample A Female 42.7
Sample B Female 42.5
Sample C Male 68.2
Sample D Male 49.6
Septum
nTPM: 42.5
Samples: 4

Max nTPM: 57.3
Min nTPM: 30.2
Sample A Female 57.3
Sample B Female 48.3
Sample C Male 34.3
Sample D Male 30.2
Ventral pallidum
nTPM: 41.7
Samples: 4

Max nTPM: 52.2
Min nTPM: 34.4
Sample A Female 42.0
Sample B Female 52.2
Sample C Male 34.4
Sample D Male 38.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 87.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 82.1
Samples: 4

Max nTPM: 85.7
Min nTPM: 78.8
Sample A Male 85.7
Sample B Male 83.6
Sample C Female 78.8
Sample D Female 80.2
Septum
nTPM: 87.6
Samples: 4

Max nTPM: 103.8
Min nTPM: 73.2
Sample A Male 73.2
Sample B Male 99.6
Sample C Female 103.8
Sample D Female 73.7
Ventral forebrain
nTPM: 79.9
Samples: 4

Max nTPM: 103.1
Min nTPM: 69.9
Sample A Male 75.2
Sample B Male 71.4
Sample C Female 103.1
Sample D Female 69.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.