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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:949.0 nTPM
HPA:949.0 nTPM
GTEx:788.4 nTPM
FANTOM5:217.2 Scaled Tags Per Million
Pig:44.5 nTPM
Mouse:59.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 949.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 930.8
2666 Male, age 74, left hemisphere 947.3
1870 Female, age 42, unknown 940.7
2411 Female, age 72, unknown 938.1
1827 Male, age 72, unknown 937.6
2019 Male, age 18, unknown 934.3
2586 Male, age 75, left hemisphere 927.2
2828 Female, age 72, unknown 927.1
1830 Male, age 51, unknown 921.8
1833 Male, age 53, unknown 919.1
2219 Male, age 76, both hemispheres 915.2
Dorsal raphe nucleus
nTPM: 937.8
2298 Female, age 72, unknown 953.6
1828 Male, age 53, unknown 943.9
2016 Female, age 72, unknown 931.1
2750 Male, age 76, both hemispheres 930.4
2047 Male, age 72, unknown 930.1
Inferior colliculus
nTPM: 937.8
2097 Female, age 72, unknown 955.9
1890 Male, age 53, unknown 947.3
1848 Female, age 42, unknown 925.0
2849 Male, age 72, unknown 922.8
Median raphe nucleus
nTPM: 920.0
2220 Male, age 76, midline 920.0
Pedunculopontine tegmental nucleus
nTPM: 938.1
2334 Male, age 80, both hemispheres 940.8
1921 Female, age 85, both hemispheres 937.5
2338 Male, age 61, both hemispheres 936.2
Periaquaductal grey, anterior
nTPM: 928.8
2502 Female, age 75, unknown 933.3
1947 Male, age 18, unknown 926.8
1795 Male, age 51, unknown 926.3
Periaquaductal grey, dorsal
nTPM: 924.7
1840 Male, age 53, unknown 937.3
1831 Male, age 72, unknown 924.8
2850 Male, age 76, both hemispheres 919.4
2464 Female, age 72, unknown 917.5
Periaquaductal grey, lateral
nTPM: 918.2
2053 Male, age 18, unknown 932.2
2140 Male, age 76, both hemispheres 920.8
2272 Male, age 74, both hemispheres 901.6
Pretectal area
nTPM: 932.6
2007 Male, age 72, unknown 947.3
1817 Female, age 42, unknown 940.0
1816 Male, age 51, unknown 938.4
2316 Male, age 76, right hemisphere 936.2
1815 Male, age 53, unknown 935.9
2667 Female, age 75, unknown 935.0
2825 Male, age 18, unknown 933.8
2224 Female, age 72, unknown 928.1
1944 Female, age 72, unknown 927.1
2407 Male, age 75, both hemispheres 921.7
2273 Male, age 74, both hemispheres 915.1
Red nucleus
nTPM: 942.9
1821 Female, age 72, unknown 969.3
2503 Female, age 72, unknown 954.6
2769 Male, age 72, unknown 945.4
2588 Male, age 74, left hemisphere 945.3
1904 Male, age 53, unknown 943.3
1865 Male, age 51, unknown 941.2
2227 Male, age 72, unknown 941.2
2725 Female, age 75, unknown 937.8
2584 Male, age 75, left hemisphere 937.6
2823 Male, age 76, right hemisphere 935.3
2785 Male, age 18, unknown 932.6
1954 Female, age 42, unknown 931.9
Substantia nigra
nTPM: 949.0
1851 Male, age 51, unknown 977.4
2665 Male, age 74, both hemispheres 967.3
1916 Female, age 42, unknown 964.5
2409 Female, age 72, unknown 958.3
2699 Male, age 18, unknown 946.3
2241 Male, age 72, unknown 945.4
1889 Female, age 72, unknown 940.4
2590 Female, age 75, unknown 936.7
1941 Male, age 53, unknown 931.2
2583 Male, age 75, right hemisphere 922.5
Superior colliculus
nTPM: 934.5
2587 Male, age 74, left hemisphere 954.1
2668 Female, age 75, unknown 941.1
1895 Male, age 76, right hemisphere 938.7
1796 Male, age 53, unknown 936.0
1913 Female, age 42, unknown 934.7
1995 Male, age 72, unknown 934.4
2087 Female, age 72, unknown 929.0
2664 Male, age 75, both hemispheres 927.7
1839 Male, age 51, unknown 925.0
2261 Male, age 18, unknown 924.4
Ventral tegmental area
nTPM: 936.4
1915 Female, age 42, unknown 961.9
2223 Female, age 72, unknown 942.3
2410 Female, age 72, unknown 933.6
1942 Male, age 51, unknown 929.8
2021 Male, age 53, unknown 928.1
2218 Male, age 76, both hemispheres 922.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 788.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 788.4
Samples: 139

Max nTPM: 2099.4
Min nTPM: 288.5
Std nTPM: 299.8
Median nTPM: 736.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2099.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2033.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1702.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1700.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1499.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1485.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1307.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 1286.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1264.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1252.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1193.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 217.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 217.2
FF:10158-103A5 76 years, female 217.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.5
Pig sample Sample description nTPM
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 44.0
Min nTPM: 36.1
Sample A Female 44.0
Sample B Female 39.8
Sample C Male 37.5
Sample D Male 36.1
Periaqueductal gray
nTPM: 31.7
Samples: 3

Max nTPM: 33.9
Min nTPM: 28.5
Sample B Female 33.9
Sample C Male 32.8
Sample D Male 28.5
Substantia nigra
nTPM: 37.1
Samples: 4

Max nTPM: 50.1
Min nTPM: 28.3
Sample A Female 50.1
Sample B Female 33.3
Sample C Male 36.8
Sample D Male 28.3
Superior colliculi
nTPM: 44.5
Samples: 4

Max nTPM: 49.2
Min nTPM: 37.3
Sample A Female 49.2
Sample B Female 47.1
Sample C Male 44.3
Sample D Male 37.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.0
Samples: 4

Max nTPM: 67.7
Min nTPM: 52.5
Sample A Male 67.7
Sample B Male 58.6
Sample C Female 52.5
Sample D Female 57.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.