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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:39.8 nTPM
HPA:39.8 nTPM
GTEx:36.3 nTPM
FANTOM5:9.2 Scaled Tags Per Million
Pig:107.3 nTPM
Mouse:130.9 nTPM
Allen mouse:2.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034489Antibody HPA034490
Glial cells Not detectedLow
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.8
Sample id Sample description nTPM
Hippocampus
nTPM: 33.6
2148 Female, age 91, left hemisphere 37.8
1898 Male, age 80, left hemisphere 36.9
2621 Female, age 67, right hemisphere 36.6
2529 Female, age 94, left hemisphere 33.3
1855 Male, age 76, left hemisphere 29.3
1911 Female, age 85, right hemisphere 27.9
Dentate gyrus
nTPM: 35.0
1927 Female, age 91, both hemispheres 38.4
2530 Female, age 94, left hemisphere 38.0
2531 Female, age 67, both hemispheres 37.8
2528 Male, age 74, both hemispheres 33.1
2010 Male, age 76, both hemispheres 31.4
2246 Female, age 85, both hemispheres 31.0
Entorhinal gyrus
nTPM: 38.6
2613 Female, age 94, left hemisphere 46.3
2686 Male, age 75, right hemisphere 39.7
2764 Male, age 80, right hemisphere 38.5
1787 Male, age 76, left hemisphere 37.7
1938 Female, age 85, left hemisphere 37.4
2117 Female, age 91, right hemisphere 31.8
Hippocampus, CA1
nTPM: 33.7
2749 Male, age 80, left hemisphere 38.8
2527 Male, age 74, both hemispheres 33.1
1873 Female, age 85, both hemispheres 32.6
2045 Male, age 76, both hemispheres 32.5
2082 Female, age 91, right hemisphere 31.3
Hippocampus, CA2
nTPM: 35.6
1963 Male, age 80, left hemisphere 46.3
2437 Female, age 94, left hemisphere 36.8
1892 Male, age 76, both hemispheres 35.8
1940 Female, age 85, left hemisphere 32.7
2113 Female, age 91, right hemisphere 32.6
2249 Male, age 74, both hemispheres 29.1
Hippocampus, CA3
nTPM: 36.0
2861 Female, age 67, both hemispheres 42.4
2620 Female, age 94, left hemisphere 40.0
2137 Male, age 80, left hemisphere 38.7
1867 Male, age 76, both hemispheres 32.6
1891 Female, age 85, both hemispheres 31.9
2436 Male, age 74, both hemispheres 30.6
Parahippocampal cortex
nTPM: 36.6
1850 Male, age 80, both hemispheres 41.0
2622 Female, age 67, right hemisphere 39.2
1990 Female, age 91, right hemisphere 38.0
2692 Male, age 74, both hemispheres 38.0
2245 Female, age 91, both hemispheres 37.4
2693 Female, age 94, both hemispheres 36.7
2250 Female, age 67, right hemisphere 35.5
2532 Female, age 72, left hemisphere 35.1
1933 Female, age 85, both hemispheres 33.5
2018 Male, age 76, both hemispheres 31.3
Perirhinal gyrus
nTPM: 39.8
1847 Female, age 91, left hemisphere 43.4
1794 Male, age 80, right hemisphere 43.2
2521 Female, age 94, right hemisphere 41.9
1841 Female, age 85, right hemisphere 37.0
2848 Male, age 76, right hemisphere 33.5
Subiculum
nTPM: 31.3
2619 Male, age 74, both hemispheres 35.5
2438 Female, age 94, left hemisphere 33.8
1977 Female, age 85, both hemispheres 32.8
2729 Female, age 91, right hemisphere 30.1
1901 Male, age 80, both hemispheres 30.0
2042 Male, age 76, both hemispheres 25.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 36.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.3
Samples: 197

Max nTPM: 104.8
Min nTPM: 17.4
Std nTPM: 13.2
Median nTPM: 33.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 104.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 80.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 78.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 76.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 68.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 67.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 65.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 62.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 60.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 60.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 60.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.2
FF:10153-102I9 76 years, female 12.3
FF:10169-103B7 60 years, female 6.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 107.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 71.2
Samples: 4

Max nTPM: 84.9
Min nTPM: 48.4
Sample A Female 84.9
Sample B Female 72.6
Sample C Male 78.9
Sample D Male 48.4
Entorhinal cortex
nTPM: 107.3
Samples: 4

Max nTPM: 126.1
Min nTPM: 91.5
Sample A Female 96.1
Sample B Female 126.1
Sample C Male 115.4
Sample D Male 91.5
Subiculum
nTPM: 74.8
Samples: 4

Max nTPM: 100.2
Min nTPM: 62.3
Sample A Female 100.2
Sample B Female 72.3
Sample C Male 64.5
Sample D Male 62.3
Ventral hippocampus
nTPM: 66.7
Samples: 4

Max nTPM: 77.1
Min nTPM: 55.5
Sample A Female 60.8
Sample B Female 55.5
Sample C Male 77.1
Sample D Male 73.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 130.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 130.9
Samples: 4

Max nTPM: 135.1
Min nTPM: 125.3
Sample A Male 135.1
Sample B Male 132.4
Sample C Female 125.3
Sample D Female 130.8
Hippocampal formation
nTPM: 121.8
Samples: 4

Max nTPM: 134.6
Min nTPM: 112.0
Sample A Male 120.0
Sample B Male 120.6
Sample C Female 134.6
Sample D Female 112.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
71213216 Antisense, RP_050816_04_A10, Mouse strain C57BL/6J (56 days, male) 3.7
71496387 Antisense, RP_050913_04_D09, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.