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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.9 nTPM
HPA:49.9 nTPM
GTEx:43.0 nTPM
FANTOM5:8.7 Scaled Tags Per Million
Pig:80.1 nTPM
Mouse:84.7 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.1
2586 Male, age 75, left hemisphere 53.1
2666 Male, age 74, left hemisphere 50.9
2219 Male, age 76, both hemispheres 47.0
2019 Male, age 18, unknown 41.0
1833 Male, age 53, unknown 38.9
2411 Female, age 72, unknown 38.0
1827 Male, age 72, unknown 37.9
2828 Female, age 72, unknown 35.5
1830 Male, age 51, unknown 34.7
1870 Female, age 42, unknown 33.8
Dorsal raphe nucleus
nTPM: 36.9
1828 Male, age 53, unknown 45.5
2047 Male, age 72, unknown 38.3
2750 Male, age 76, both hemispheres 34.9
2298 Female, age 72, unknown 34.3
2016 Female, age 72, unknown 31.6
Inferior colliculus
nTPM: 38.6
1890 Male, age 53, unknown 40.7
2097 Female, age 72, unknown 39.1
2849 Male, age 72, unknown 37.5
1848 Female, age 42, unknown 37.1
Median raphe nucleus
nTPM: 36.7
2220 Male, age 76, midline 36.7
Pedunculopontine tegmental nucleus
nTPM: 35.8
2334 Male, age 80, both hemispheres 39.7
1921 Female, age 85, both hemispheres 36.7
2338 Male, age 61, both hemispheres 31.1
Periaquaductal grey, anterior
nTPM: 38.7
1947 Male, age 18, unknown 40.6
2502 Female, age 75, unknown 39.4
1795 Male, age 51, unknown 36.0
Periaquaductal grey, dorsal
nTPM: 32.5
1840 Male, age 53, unknown 34.4
2464 Female, age 72, unknown 34.0
2850 Male, age 76, both hemispheres 31.7
1831 Male, age 72, unknown 29.9
Periaquaductal grey, lateral
nTPM: 30.4
2140 Male, age 76, both hemispheres 32.5
2053 Male, age 18, unknown 31.7
2272 Male, age 74, both hemispheres 26.9
Pretectal area
nTPM: 37.8
1816 Male, age 51, unknown 49.5
1817 Female, age 42, unknown 49.2
1944 Female, age 72, unknown 46.0
2007 Male, age 72, unknown 45.1
1815 Male, age 53, unknown 41.4
2407 Male, age 75, both hemispheres 34.7
2667 Female, age 75, unknown 34.6
2825 Male, age 18, unknown 32.0
2224 Female, age 72, unknown 29.4
2316 Male, age 76, right hemisphere 27.7
2273 Male, age 74, both hemispheres 26.2
Red nucleus
nTPM: 35.7
2584 Male, age 75, left hemisphere 44.2
2588 Male, age 74, left hemisphere 39.7
1821 Female, age 72, unknown 39.6
2785 Male, age 18, unknown 38.2
2725 Female, age 75, unknown 37.3
2227 Male, age 72, unknown 36.0
2769 Male, age 72, unknown 35.2
2503 Female, age 72, unknown 32.6
1954 Female, age 42, unknown 32.4
2823 Male, age 76, right hemisphere 31.5
1865 Male, age 51, unknown 30.8
1904 Male, age 53, unknown 30.5
Substantia nigra
nTPM: 49.9
1916 Female, age 42, unknown 62.8
2241 Male, age 72, unknown 59.2
1851 Male, age 51, unknown 53.5
2665 Male, age 74, both hemispheres 52.4
1941 Male, age 53, unknown 48.1
2699 Male, age 18, unknown 47.6
1889 Female, age 72, unknown 46.5
2583 Male, age 75, right hemisphere 45.4
2409 Female, age 72, unknown 45.0
2590 Female, age 75, unknown 38.4
Superior colliculus
nTPM: 36.5
2668 Female, age 75, unknown 45.8
2664 Male, age 75, both hemispheres 42.6
2087 Female, age 72, unknown 40.7
1796 Male, age 53, unknown 37.5
1839 Male, age 51, unknown 36.3
2261 Male, age 18, unknown 35.7
1895 Male, age 76, right hemisphere 33.7
2587 Male, age 74, left hemisphere 33.4
1913 Female, age 42, unknown 31.2
1995 Male, age 72, unknown 28.1
Ventral tegmental area
nTPM: 40.0
2410 Female, age 72, unknown 48.6
1915 Female, age 42, unknown 44.0
2218 Male, age 76, both hemispheres 43.7
1942 Male, age 51, unknown 39.1
2223 Female, age 72, unknown 34.2
2021 Male, age 53, unknown 30.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.0
Samples: 139

Max nTPM: 118.4
Min nTPM: 23.6
Std nTPM: 17.9
Median nTPM: 37.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 118.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 117.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 90.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 86.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 86.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 85.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 80.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 79.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 76.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 76.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 76.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.7
FF:10158-103A5 76 years, female 8.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.1
Pig sample Sample description nTPM
Midbrain
nTPM: 80.2
Samples: 4

Max nTPM: 92.0
Min nTPM: 75.5
Sample A Female 92.0
Sample B Female 75.5
Sample C Male 77.4
Sample D Male 75.7
Periaqueductal gray
nTPM: 59.0
Samples: 3

Max nTPM: 65.7
Min nTPM: 51.0
Sample B Female 65.7
Sample C Male 60.3
Sample D Male 51.0
Substantia nigra
nTPM: 78.0
Samples: 4

Max nTPM: 94.0
Min nTPM: 64.0
Sample A Female 94.0
Sample B Female 64.0
Sample C Male 84.4
Sample D Male 69.4
Superior colliculi
nTPM: 79.9
Samples: 4

Max nTPM: 90.6
Min nTPM: 56.4
Sample A Female 90.6
Sample B Female 56.4
Sample C Male 87.9
Sample D Male 84.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 84.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 84.7
Samples: 4

Max nTPM: 88.7
Min nTPM: 81.2
Sample A Male 82.2
Sample B Male 81.2
Sample C Female 88.7
Sample D Female 86.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
71213216 Antisense, RP_050816_04_A10, Mouse strain C57BL/6J (56 days, male) 1.5
71496387 Antisense, RP_050913_04_D09, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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