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SYNGAP1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:11.3 nTPM
HPA:11.3 nTPM
GTEx:28.2 nTPM
FANTOM5:132.0 Scaled Tags Per Million
Pig:48.7 nTPM
Mouse:64.0 nTPM
Allen mouse:15.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038373
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.3
2290 Female, age 72, unknown 7.2
2846 Female, age 79, unknown 3.8
1857 Female, age 85, left hemisphere 3.6
1854 Male, age 80, left hemisphere 1.7
2288 Male, age 75, left hemisphere 1.0
1781 Male, age 74, unknown 0.9
2289 Male, age 61, right hemisphere 0.4
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 4.0
2645 Female, age 72, unknown 8.8
2568 Male, age 61, both hemispheres 8.5
2284 Female, age 91, both hemispheres 6.7
2196 Female, age 79, unknown 5.9
1956 Male, age 74, unknown 2.8
2491 Male, age 75, both hemispheres 2.2
2198 Male, age 80, both hemispheres 1.1
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 4.0
1783 Male, age 74, unknown 12.9
2824 Male, age 61, right hemisphere 7.2
2698 Female, age 72, unknown 4.5
1806 Female, age 85, left hemisphere 4.1
1856 Female, age 91, right hemisphere 3.5
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 11.3
2195 Female, age 85, both hemispheres 15.3
2775 Male, age 80, right hemisphere 14.0
2029 Male, age 61, right hemisphere 13.1
1979 Male, age 74, unknown 7.6
1812 Female, age 91, both hemispheres 6.6
Olfactory tubercle
nTPM: 7.9
2487 Female, age 94, left hemisphere 12.7
1846 Male, age 80, right hemisphere 8.5
1998 Female, age 91, both hemispheres 6.7
2856 Male, age 75, right hemisphere 3.9
Putamen
nTPM: 2.5
1838 Male, age 80, right hemisphere 6.6
1829 Male, age 74, unknown 5.6
2466 Female, age 79, unknown 3.1
2489 Female, age 72, unknown 1.9
2647 Male, age 75, left hemisphere 0.4
1937 Female, age 91, right hemisphere 0.0
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 10.2
1960 Male, age 74, unknown 24.4
2629 Female, age 94, right hemisphere 13.2
2059 Female, age 85, both hemispheres 11.7
2031 Female, age 72, unknown 9.9
2199 Male, age 80, right hemisphere 7.1
2009 Female, age 91, both hemispheres 5.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.6
Samples: 246

Max nTPM: 64.4
Min nTPM: 4.2
Std nTPM: 8.2
Median nTPM: 20.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 64.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 41.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 40.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 39.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 37.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 37.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 36.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 36.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 35.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 35.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 34.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.2
Samples: 246

Max nTPM: 64.8
Min nTPM: 3.6
Std nTPM: 12.6
Median nTPM: 28.8
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 64.8
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 58.4
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 58.0
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 56.0
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 55.5
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 50.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 49.6
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 49.3
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 49.2
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 49.0
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 47.8
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Brain - Putamen (basal ganglia)
Average nTPM: 16.8
Samples: 205

Max nTPM: 37.5
Min nTPM: 2.5
Std nTPM: 7.4
Median nTPM: 16.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 37.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 36.0
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 33.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 32.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 31.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 31.0
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 29.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 29.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 29.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 29.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 29.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 95.5
FF:10164-103B2 76 years, female 95.5
Globus pallidus
Scaled Tags Per Million: 47.1
FF:10175-103C4 60 years, female 59.9
FF:10161-103A8 76 years, female 34.3
Nucleus accumbens
Scaled Tags Per Million: 116.3
FF:10037-101F1 23-56 years, mixed 116.3
Putamen
Scaled Tags Per Million: 132.0
FF:10176-103C5 60 years, female 132.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 48.7
Pig sample Sample description nTPM
Caudate
nTPM: 48.7
Samples: 4

Max nTPM: 57.1
Min nTPM: 39.9
Sample A Female 39.9
Sample B Female 53.0
Sample C Male 57.1
Sample D Male 44.8
Putamen
nTPM: 38.3
Samples: 4

Max nTPM: 49.2
Min nTPM: 17.8
Sample A Female 17.8
Sample B Female 41.5
Sample C Male 44.8
Sample D Male 49.2
Septum
nTPM: 33.2
Samples: 4

Max nTPM: 40.3
Min nTPM: 14.8
Sample A Female 39.3
Sample B Female 40.3
Sample C Male 14.8
Sample D Male 38.2
Ventral pallidum
nTPM: 37.7
Samples: 4

Max nTPM: 43.5
Min nTPM: 28.1
Sample A Female 43.5
Sample B Female 40.9
Sample C Male 28.1
Sample D Male 38.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 64.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 64.0
Samples: 4

Max nTPM: 66.3
Min nTPM: 61.4
Sample A Male 61.9
Sample B Male 66.3
Sample C Female 61.4
Sample D Female 66.3
Septum
nTPM: 46.4
Samples: 4

Max nTPM: 49.8
Min nTPM: 41.6
Sample A Male 46.1
Sample B Male 49.8
Sample C Female 41.6
Sample D Female 48.2
Ventral forebrain
nTPM: 59.3
Samples: 4

Max nTPM: 64.0
Min nTPM: 54.6
Sample A Male 62.2
Sample B Male 54.6
Sample C Female 56.2
Sample D Female 64.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 15.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 15.9
71020897 Antisense, RP_050512_03_H06, Mouse strain C57BL/6J (56 days, male) 15.9
Pallidum
Expression energy: 11.3
71020897 Antisense, RP_050512_03_H06, Mouse strain C57BL/6J (56 days, male) 11.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.