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SYNGAP1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Neuronal projections: Not detected
Synapses: Medium
RNA expressioni
Consensus:26.4 nTPM
HPA:26.4 nTPM
GTEx:31.1 nTPM
FANTOM5:194.7 Scaled Tags Per Million
Pig:79.1 nTPM
Mouse:74.9 nTPM
Allen mouse:17.4 Expression energy

HIPPOCAMPUS - Extended tissue profilei , antibody HPA038373
Glial cells Not detected
Neuronal cells Medium
Neuronal projections Not detected
Synapses Medium

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038373
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 26.4
Sample id Sample description nTPM
Hippocampus
nTPM: 18.7
2621 Female, age 67, right hemisphere 31.3
1911 Female, age 85, right hemisphere 22.0
2148 Female, age 91, left hemisphere 20.3
1855 Male, age 76, left hemisphere 16.6
1898 Male, age 80, left hemisphere 13.8
2529 Female, age 94, left hemisphere 8.4
Dentate gyrus
nTPM: 16.2
2531 Female, age 67, both hemispheres 29.9
1927 Female, age 91, both hemispheres 21.5
2246 Female, age 85, both hemispheres 15.4
2010 Male, age 76, both hemispheres 13.2
2530 Female, age 94, left hemisphere 11.4
2528 Male, age 74, both hemispheres 5.8
Entorhinal gyrus
nTPM: 12.6
2613 Female, age 94, left hemisphere 26.8
1787 Male, age 76, left hemisphere 19.8
2764 Male, age 80, right hemisphere 10.3
1938 Female, age 85, left hemisphere 9.4
2686 Male, age 75, right hemisphere 8.7
2117 Female, age 91, right hemisphere 0.6
Hippocampus, CA1
nTPM: 25.0
2749 Male, age 80, left hemisphere 59.7
2527 Male, age 74, both hemispheres 20.6
1873 Female, age 85, both hemispheres 18.2
2045 Male, age 76, both hemispheres 17.9
2082 Female, age 91, right hemisphere 8.8
Hippocampus, CA2
nTPM: 12.4
1963 Male, age 80, left hemisphere 19.7
1892 Male, age 76, both hemispheres 18.8
2113 Female, age 91, right hemisphere 12.4
2249 Male, age 74, both hemispheres 10.7
2437 Female, age 94, left hemisphere 10.6
1940 Female, age 85, left hemisphere 2.1
Hippocampus, CA3
nTPM: 26.4
2137 Male, age 80, left hemisphere 57.8
2861 Female, age 67, both hemispheres 32.7
2620 Female, age 94, left hemisphere 32.1
1867 Male, age 76, both hemispheres 15.0
2436 Male, age 74, both hemispheres 12.4
1891 Female, age 85, both hemispheres 8.2
Parahippocampal cortex
nTPM: 11.4
2245 Female, age 91, both hemispheres 30.5
2693 Female, age 94, both hemispheres 16.4
2250 Female, age 67, right hemisphere 15.4
2622 Female, age 67, right hemisphere 13.2
1933 Female, age 85, both hemispheres 8.6
1850 Male, age 80, both hemispheres 8.4
2532 Female, age 72, left hemisphere 6.3
2018 Male, age 76, both hemispheres 5.7
2692 Male, age 74, both hemispheres 5.5
1990 Female, age 91, right hemisphere 3.9
Perirhinal gyrus
nTPM: 12.8
2521 Female, age 94, right hemisphere 21.8
1847 Female, age 91, left hemisphere 14.1
2848 Male, age 76, right hemisphere 11.0
1794 Male, age 80, right hemisphere 9.8
1841 Female, age 85, right hemisphere 7.5
Subiculum
nTPM: 8.7
1901 Male, age 80, both hemispheres 19.7
2042 Male, age 76, both hemispheres 11.1
1977 Female, age 85, both hemispheres 7.3
2619 Male, age 74, both hemispheres 5.8
2438 Female, age 94, left hemisphere 5.1
2729 Female, age 91, right hemisphere 3.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.1
Samples: 197

Max nTPM: 89.7
Min nTPM: 3.5
Std nTPM: 17.9
Median nTPM: 29.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 89.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 85.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 77.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 72.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 70.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 69.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 68.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 67.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 67.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 63.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 63.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 194.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 194.7
FF:10169-103B7 60 years, female 247.9
FF:10153-102I9 76 years, female 141.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 79.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 69.3
Samples: 4

Max nTPM: 83.5
Min nTPM: 51.5
Sample A Female 83.5
Sample B Female 81.4
Sample C Male 51.5
Sample D Male 60.8
Entorhinal cortex
nTPM: 79.2
Samples: 4

Max nTPM: 97.1
Min nTPM: 65.7
Sample A Female 84.1
Sample B Female 65.7
Sample C Male 97.1
Sample D Male 69.7
Subiculum
nTPM: 67.1
Samples: 4

Max nTPM: 86.2
Min nTPM: 54.9
Sample A Female 86.2
Sample B Female 60.3
Sample C Male 67.0
Sample D Male 54.9
Ventral hippocampus
nTPM: 68.4
Samples: 4

Max nTPM: 96.2
Min nTPM: 49.1
Sample A Female 49.1
Sample B Female 53.1
Sample C Male 75.3
Sample D Male 96.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 74.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 74.9
Samples: 4

Max nTPM: 96.3
Min nTPM: 65.7
Sample A Male 69.5
Sample B Male 68.2
Sample C Female 65.7
Sample D Female 96.3
Hippocampal formation
nTPM: 70.6
Samples: 4

Max nTPM: 77.9
Min nTPM: 62.7
Sample A Male 65.2
Sample B Male 76.4
Sample C Female 77.9
Sample D Female 62.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.4
71020897 Antisense, RP_050512_03_H06, Mouse strain C57BL/6J (56 days, male) 17.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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