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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.8 nTPM
HPA:17.8 nTPM
GTEx:18.7 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:37.7 nTPM
Mouse:28.8 nTPM
Allen mouse:7.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 17.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.8
2288 Male, age 75, left hemisphere 17.8
1857 Female, age 85, left hemisphere 16.9
1781 Male, age 74, unknown 15.7
1854 Male, age 80, left hemisphere 15.5
2846 Female, age 79, unknown 15.4
2481 Female, age 94, left hemisphere 15.3
2289 Male, age 61, right hemisphere 15.2
2290 Female, age 72, unknown 14.8
Claustrum
nTPM: 17.1
2198 Male, age 80, both hemispheres 17.9
2284 Female, age 91, both hemispheres 17.9
2568 Male, age 61, both hemispheres 17.7
1956 Male, age 74, unknown 17.3
2491 Male, age 75, both hemispheres 17.2
2645 Female, age 72, unknown 16.9
2196 Female, age 79, unknown 16.4
2292 Female, age 85, both hemispheres 16.4
2392 Female, age 94, both hemispheres 16.4
Globus pallidus, externus
nTPM: 14.7
2772 Female, age 79, unknown 15.1
2646 Male, age 61, right hemisphere 15.0
2567 Female, age 72, unknown 14.8
2395 Male, age 75, both hemispheres 14.6
1996 Male, age 80, right hemisphere 14.0
Globus pallidus, internus
nTPM: 15.0
2566 Female, age 72, unknown 15.8
1818 Male, age 74, unknown 15.7
2287 Male, age 75, right hemisphere 15.2
2483 Female, age 94, right hemisphere 15.1
2037 Male, age 80, right hemisphere 14.7
2111 Female, age 85, right hemisphere 14.6
2778 Female, age 91, both hemispheres 14.0
Nucleus accumbens
nTPM: 15.8
2698 Female, age 72, unknown 17.5
1783 Male, age 74, unknown 17.4
1806 Female, age 85, left hemisphere 16.5
1856 Female, age 91, right hemisphere 16.5
2824 Male, age 61, right hemisphere 16.2
2286 Male, age 75, left hemisphere 14.7
2732 Male, age 80, right hemisphere 14.3
2391 Female, age 94, left hemisphere 13.1
Nucleus basalis of Meynert
nTPM: 15.9
2821 Male, age 75, both hemispheres 17.0
2484 Female, age 94, left hemisphere 16.0
2393 Male, age 80, right hemisphere 15.4
2569 Male, age 61, both hemispheres 15.3
Nucleus of the diagonal band
nTPM: 17.7
2195 Female, age 85, both hemispheres 19.9
2029 Male, age 61, right hemisphere 18.5
2775 Male, age 80, right hemisphere 17.1
1812 Female, age 91, both hemispheres 17.0
1979 Male, age 74, unknown 16.2
Olfactory tubercle
nTPM: 17.8
1846 Male, age 80, right hemisphere 18.8
2487 Female, age 94, left hemisphere 18.1
1998 Female, age 91, both hemispheres 17.7
2856 Male, age 75, right hemisphere 16.8
Putamen
nTPM: 15.9
2647 Male, age 75, left hemisphere 17.5
1838 Male, age 80, right hemisphere 16.6
1829 Male, age 74, unknown 15.8
2489 Female, age 72, unknown 15.7
2466 Female, age 79, unknown 15.3
2482 Female, age 94, left hemisphere 15.3
1937 Female, age 91, right hemisphere 15.0
Septal nuclei
nTPM: 17.5
2059 Female, age 85, both hemispheres 19.2
1960 Male, age 74, unknown 18.7
2031 Female, age 72, unknown 18.5
2009 Female, age 91, both hemispheres 18.2
2629 Female, age 94, right hemisphere 18.2
2199 Male, age 80, right hemisphere 15.2
2394 Male, age 61, left hemisphere 14.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.4
Samples: 246

Max nTPM: 26.4
Min nTPM: 8.9
Std nTPM: 3.0
Median nTPM: 17.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 26.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 24.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 24.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 23.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 23.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 22.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 22.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 22.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 22.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 22.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 22.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.7
Samples: 246

Max nTPM: 30.7
Min nTPM: 10.3
Std nTPM: 3.5
Median nTPM: 18.6
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 30.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 28.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 27.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 26.6
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 26.4
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 26.0
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 26.0
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 26.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 25.5
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 25.2
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 25.2
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Brain - Putamen (basal ganglia)
Average nTPM: 17.9
Samples: 205

Max nTPM: 25.8
Min nTPM: 10.8
Std nTPM: 3.2
Median nTPM: 18.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 25.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 25.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 25.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 25.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 24.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 24.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 24.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 24.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 23.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 23.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 23.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.1
FF:10164-103B2 76 years, female 35.1
Globus pallidus
Scaled Tags Per Million: 19.4
FF:10161-103A8 76 years, female 25.4
FF:10175-103C4 60 years, female 13.4
Nucleus accumbens
Scaled Tags Per Million: 33.5
FF:10037-101F1 23-56 years, mixed 33.5
Putamen
Scaled Tags Per Million: 37.7
FF:10176-103C5 60 years, female 37.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.7
Pig sample Sample description nTPM
Caudate
nTPM: 37.2
Samples: 4

Max nTPM: 44.0
Min nTPM: 29.6
Sample A Female 29.6
Sample B Female 39.7
Sample C Male 44.0
Sample D Male 35.6
Putamen
nTPM: 37.8
Samples: 4

Max nTPM: 43.6
Min nTPM: 32.0
Sample A Female 32.0
Sample B Female 33.8
Sample C Male 43.6
Sample D Male 41.6
Septum
nTPM: 32.0
Samples: 4

Max nTPM: 33.6
Min nTPM: 28.3
Sample A Female 33.0
Sample B Female 33.0
Sample C Male 33.6
Sample D Male 28.3
Ventral pallidum
nTPM: 35.2
Samples: 4

Max nTPM: 42.2
Min nTPM: 29.5
Sample A Female 29.5
Sample B Female 35.7
Sample C Male 42.2
Sample D Male 33.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 28.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.4
Samples: 4

Max nTPM: 30.6
Min nTPM: 23.7
Sample A Male 25.9
Sample B Male 23.7
Sample C Female 30.6
Sample D Female 29.4
Septum
nTPM: 23.8
Samples: 4

Max nTPM: 25.0
Min nTPM: 21.4
Sample A Male 24.0
Sample B Male 24.9
Sample C Female 21.4
Sample D Female 25.0
Ventral forebrain
nTPM: 28.8
Samples: 4

Max nTPM: 32.0
Min nTPM: 26.7
Sample A Male 26.7
Sample B Male 28.1
Sample C Female 28.5
Sample D Female 32.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.3
70278081 Antisense, RP_050531_02_D08, Mouse strain C57BL/6J (56 days, male) 7.3
Pallidum
Expression energy: 7.0
70278081 Antisense, RP_050531_02_D08, Mouse strain C57BL/6J (56 days, male) 7.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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