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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:138.6 nTPM
HPA:138.6 nTPM
GTEx:208.0 nTPM
FANTOM5:68.1 Scaled Tags Per Million
Pig:18.3 nTPM
Mouse:112.8 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 138.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 119.8
2586 Male, age 75, left hemisphere 133.4
2411 Female, age 72, unknown 132.3
2828 Female, age 72, unknown 124.7
1827 Male, age 72, unknown 121.7
1870 Female, age 42, unknown 119.9
1833 Male, age 53, unknown 117.5
1830 Male, age 51, unknown 116.6
2219 Male, age 76, both hemispheres 113.5
2019 Male, age 18, unknown 109.2
2666 Male, age 74, left hemisphere 109.2
Dorsal raphe nucleus
nTPM: 135.9
2298 Female, age 72, unknown 159.3
2047 Male, age 72, unknown 140.3
1828 Male, age 53, unknown 127.7
2016 Female, age 72, unknown 127.5
2750 Male, age 76, both hemispheres 124.7
Inferior colliculus
nTPM: 127.5
2097 Female, age 72, unknown 136.8
1848 Female, age 42, unknown 127.4
1890 Male, age 53, unknown 125.6
2849 Male, age 72, unknown 120.3
Median raphe nucleus
nTPM: 136.4
2220 Male, age 76, midline 136.4
Pedunculopontine tegmental nucleus
nTPM: 125.4
2334 Male, age 80, both hemispheres 132.9
1921 Female, age 85, both hemispheres 125.9
2338 Male, age 61, both hemispheres 117.4
Periaquaductal grey, anterior
nTPM: 138.6
1947 Male, age 18, unknown 146.8
2502 Female, age 75, unknown 136.4
1795 Male, age 51, unknown 132.5
Periaquaductal grey, dorsal
nTPM: 126.9
1840 Male, age 53, unknown 136.3
2464 Female, age 72, unknown 127.6
2850 Male, age 76, both hemispheres 127.1
1831 Male, age 72, unknown 116.4
Periaquaductal grey, lateral
nTPM: 123.9
2140 Male, age 76, both hemispheres 130.1
2053 Male, age 18, unknown 121.9
2272 Male, age 74, both hemispheres 119.8
Pretectal area
nTPM: 120.6
2224 Female, age 72, unknown 136.2
2825 Male, age 18, unknown 128.0
2273 Male, age 74, both hemispheres 127.5
2316 Male, age 76, right hemisphere 125.3
1817 Female, age 42, unknown 120.5
2667 Female, age 75, unknown 118.7
2007 Male, age 72, unknown 117.9
1944 Female, age 72, unknown 116.0
1816 Male, age 51, unknown 114.2
1815 Male, age 53, unknown 114.1
2407 Male, age 75, both hemispheres 108.0
Red nucleus
nTPM: 118.8
2503 Female, age 72, unknown 130.5
2227 Male, age 72, unknown 126.1
1821 Female, age 72, unknown 125.0
2725 Female, age 75, unknown 124.8
2769 Male, age 72, unknown 124.4
1954 Female, age 42, unknown 122.3
1904 Male, age 53, unknown 115.6
2588 Male, age 74, left hemisphere 113.8
2823 Male, age 76, right hemisphere 111.9
2785 Male, age 18, unknown 111.8
1865 Male, age 51, unknown 111.1
2584 Male, age 75, left hemisphere 109.0
Substantia nigra
nTPM: 125.3
1916 Female, age 42, unknown 146.3
1851 Male, age 51, unknown 138.2
2241 Male, age 72, unknown 127.7
2699 Male, age 18, unknown 127.7
1889 Female, age 72, unknown 124.0
1941 Male, age 53, unknown 123.8
2590 Female, age 75, unknown 118.8
2665 Male, age 74, both hemispheres 117.7
2409 Female, age 72, unknown 115.0
2583 Male, age 75, right hemisphere 114.2
Superior colliculus
nTPM: 120.2
1796 Male, age 53, unknown 132.9
1839 Male, age 51, unknown 127.1
2261 Male, age 18, unknown 124.3
2668 Female, age 75, unknown 121.9
2087 Female, age 72, unknown 119.2
2587 Male, age 74, left hemisphere 116.9
2664 Male, age 75, both hemispheres 116.1
1995 Male, age 72, unknown 115.6
1895 Male, age 76, right hemisphere 115.1
1913 Female, age 42, unknown 112.9
Ventral tegmental area
nTPM: 134.1
1915 Female, age 42, unknown 143.9
1942 Male, age 51, unknown 138.6
2410 Female, age 72, unknown 133.3
2021 Male, age 53, unknown 132.9
2223 Female, age 72, unknown 128.1
2218 Male, age 76, both hemispheres 127.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 208.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 208.0
Samples: 139

Max nTPM: 477.6
Min nTPM: 87.5
Std nTPM: 69.4
Median nTPM: 199.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 477.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 459.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 442.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 409.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 380.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 374.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 349.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 342.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 330.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 330.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 299.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.1
FF:10158-103A5 76 years, female 68.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.3
Pig sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 14.6
Min nTPM: 6.3
Sample A Female 13.2
Sample B Female 14.5
Sample C Male 14.6
Sample D Male 6.3
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 8.8
Min nTPM: 4.8
Sample B Female 8.8
Sample C Male 8.6
Sample D Male 4.8
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 23.4
Min nTPM: 13.5
Sample A Female 18.8
Sample B Female 23.4
Sample C Male 16.0
Sample D Male 13.5
Superior colliculi
nTPM: 18.3
Samples: 4

Max nTPM: 23.8
Min nTPM: 11.9
Sample A Female 17.1
Sample B Female 20.2
Sample C Male 23.8
Sample D Male 11.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.9
Samples: 4

Max nTPM: 148.5
Min nTPM: 85.4
Sample A Male 148.5
Sample B Male 101.0
Sample C Female 85.4
Sample D Female 116.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
641541 Antisense, RP_040914_01_F12, Mouse strain C57BL/6J (56 days, male) 9.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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