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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:48.3 nTPM
HPA:48.3 nTPM
GTEx:29.7 nTPM
FANTOM5:169.7 Scaled Tags Per Million
Pig:26.7 nTPM
Mouse:42.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044255
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.8
2846 Female, age 79, unknown 47.3
2288 Male, age 75, left hemisphere 46.7
1857 Female, age 85, left hemisphere 46.4
2481 Female, age 94, left hemisphere 45.5
1854 Male, age 80, left hemisphere 45.3
2290 Female, age 72, unknown 44.5
1781 Male, age 74, unknown 41.4
2289 Male, age 61, right hemisphere 41.0
Claustrum
nTPM: 41.9
2392 Female, age 94, both hemispheres 47.3
1956 Male, age 74, unknown 42.8
2196 Female, age 79, unknown 42.3
2491 Male, age 75, both hemispheres 42.0
2568 Male, age 61, both hemispheres 41.4
2292 Female, age 85, both hemispheres 40.9
2284 Female, age 91, both hemispheres 40.5
2198 Male, age 80, both hemispheres 39.9
2645 Female, age 72, unknown 39.9
Globus pallidus, externus
nTPM: 45.1
1996 Male, age 80, right hemisphere 51.4
2772 Female, age 79, unknown 48.1
2395 Male, age 75, both hemispheres 45.1
2646 Male, age 61, right hemisphere 41.3
2567 Female, age 72, unknown 39.9
Globus pallidus, internus
nTPM: 48.3
2287 Male, age 75, right hemisphere 54.0
2778 Female, age 91, both hemispheres 52.1
2037 Male, age 80, right hemisphere 48.9
2111 Female, age 85, right hemisphere 48.0
1818 Male, age 74, unknown 47.9
2483 Female, age 94, right hemisphere 44.3
2566 Female, age 72, unknown 43.0
Nucleus accumbens
nTPM: 45.7
2391 Female, age 94, left hemisphere 49.7
1806 Female, age 85, left hemisphere 47.6
2286 Male, age 75, left hemisphere 47.1
2698 Female, age 72, unknown 46.6
1856 Female, age 91, right hemisphere 46.4
2824 Male, age 61, right hemisphere 44.3
1783 Male, age 74, unknown 44.2
2732 Male, age 80, right hemisphere 40.1
Nucleus basalis of Meynert
nTPM: 41.5
2393 Male, age 80, right hemisphere 44.4
2569 Male, age 61, both hemispheres 41.0
2484 Female, age 94, left hemisphere 40.9
2821 Male, age 75, both hemispheres 39.8
Nucleus of the diagonal band
nTPM: 43.0
1812 Female, age 91, both hemispheres 45.4
2195 Female, age 85, both hemispheres 43.6
2029 Male, age 61, right hemisphere 43.5
2775 Male, age 80, right hemisphere 42.1
1979 Male, age 74, unknown 40.4
Olfactory tubercle
nTPM: 42.7
2487 Female, age 94, left hemisphere 45.4
2856 Male, age 75, right hemisphere 43.0
1846 Male, age 80, right hemisphere 42.5
1998 Female, age 91, both hemispheres 40.1
Putamen
nTPM: 42.9
1838 Male, age 80, right hemisphere 45.9
1937 Female, age 91, right hemisphere 44.8
2482 Female, age 94, left hemisphere 44.1
1829 Male, age 74, unknown 43.7
2466 Female, age 79, unknown 43.5
2489 Female, age 72, unknown 39.6
2647 Male, age 75, left hemisphere 38.7
Septal nuclei
nTPM: 41.8
2031 Female, age 72, unknown 44.0
2394 Male, age 61, left hemisphere 43.0
2629 Female, age 94, right hemisphere 42.0
2199 Male, age 80, right hemisphere 41.8
2009 Female, age 91, both hemispheres 41.5
1960 Male, age 74, unknown 41.3
2059 Female, age 85, both hemispheres 38.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.3
Samples: 246

Max nTPM: 66.4
Min nTPM: 2.8
Std nTPM: 10.0
Median nTPM: 27.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 66.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 64.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 62.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 56.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 54.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 54.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 53.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 52.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 51.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 51.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 46.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.5
Samples: 246

Max nTPM: 77.3
Min nTPM: 2.6
Std nTPM: 11.2
Median nTPM: 29.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 77.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 61.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 57.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 57.0
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 56.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 51.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 50.2
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 48.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 48.1
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 47.0
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 46.1
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Brain - Putamen (basal ganglia)
Average nTPM: 29.7
Samples: 205

Max nTPM: 83.0
Min nTPM: 1.3
Std nTPM: 10.6
Median nTPM: 29.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 83.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 68.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 53.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 53.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 53.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 52.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 52.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 52.1
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 51.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 48.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 48.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 169.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 109.1
FF:10164-103B2 76 years, female 109.1
Globus pallidus
Scaled Tags Per Million: 169.7
FF:10175-103C4 60 years, female 224.9
FF:10161-103A8 76 years, female 114.5
Nucleus accumbens
Scaled Tags Per Million: 113.4
FF:10037-101F1 23-56 years, mixed 113.4
Putamen
Scaled Tags Per Million: 152.9
FF:10176-103C5 60 years, female 152.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 26.7
Pig sample Sample description nTPM
Caudate
nTPM: 19.4
Samples: 4

Max nTPM: 22.5
Min nTPM: 14.6
Sample A Female 20.7
Sample B Female 14.6
Sample C Male 22.5
Sample D Male 19.6
Putamen
nTPM: 26.7
Samples: 4

Max nTPM: 30.8
Min nTPM: 21.5
Sample A Female 27.9
Sample B Female 21.5
Sample C Male 30.8
Sample D Male 26.7
Septum
nTPM: 18.7
Samples: 4

Max nTPM: 21.5
Min nTPM: 16.2
Sample A Female 21.5
Sample B Female 19.0
Sample C Male 16.2
Sample D Male 18.0
Ventral pallidum
nTPM: 22.0
Samples: 4

Max nTPM: 24.8
Min nTPM: 18.6
Sample A Female 22.6
Sample B Female 22.0
Sample C Male 18.6
Sample D Male 24.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.6
Samples: 4

Max nTPM: 46.9
Min nTPM: 38.3
Sample A Male 46.9
Sample B Male 42.3
Sample C Female 38.7
Sample D Female 38.3
Septum
nTPM: 42.2
Samples: 4

Max nTPM: 46.2
Min nTPM: 36.8
Sample A Male 36.8
Sample B Male 46.2
Sample C Female 44.7
Sample D Female 41.1
Ventral forebrain
nTPM: 37.9
Samples: 4

Max nTPM: 39.8
Min nTPM: 35.3
Sample A Male 39.6
Sample B Male 36.8
Sample C Female 39.8
Sample D Female 35.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
71612177 Antisense, RP_050927_02_C02, Mouse strain C57BL/6J (56 days, male) 0.1
70725573 Antisense, RP_050705_04_C12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71612177 Antisense, RP_050927_02_C02, Mouse strain C57BL/6J (56 days, male) 0.1
70725573 Antisense, RP_050705_04_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.