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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.2 nTPM
HPA:34.2 nTPM
GTEx:15.2 nTPM
FANTOM5:17.3 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:8.6 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.2
2411 Female, age 72, unknown 33.1
2586 Male, age 75, left hemisphere 32.9
2019 Male, age 18, unknown 32.8
1833 Male, age 53, unknown 32.5
1870 Female, age 42, unknown 32.5
2828 Female, age 72, unknown 32.2
1830 Male, age 51, unknown 31.9
1827 Male, age 72, unknown 31.4
2219 Male, age 76, both hemispheres 31.4
2666 Male, age 74, left hemisphere 31.2
Dorsal raphe nucleus
nTPM: 34.0
2298 Female, age 72, unknown 35.8
2047 Male, age 72, unknown 35.6
2750 Male, age 76, both hemispheres 33.8
1828 Male, age 53, unknown 32.6
2016 Female, age 72, unknown 32.4
Inferior colliculus
nTPM: 31.3
1848 Female, age 42, unknown 31.7
2097 Female, age 72, unknown 31.5
2849 Male, age 72, unknown 31.4
1890 Male, age 53, unknown 30.5
Median raphe nucleus
nTPM: 34.2
2220 Male, age 76, midline 34.2
Pedunculopontine tegmental nucleus
nTPM: 31.9
1921 Female, age 85, both hemispheres 32.2
2334 Male, age 80, both hemispheres 32.2
2338 Male, age 61, both hemispheres 31.3
Periaquaductal grey, anterior
nTPM: 33.7
1795 Male, age 51, unknown 34.4
2502 Female, age 75, unknown 33.7
1947 Male, age 18, unknown 33.0
Periaquaductal grey, dorsal
nTPM: 31.6
1831 Male, age 72, unknown 31.8
1840 Male, age 53, unknown 31.8
2850 Male, age 76, both hemispheres 31.8
2464 Female, age 72, unknown 31.0
Periaquaductal grey, lateral
nTPM: 32.9
2272 Male, age 74, both hemispheres 34.2
2053 Male, age 18, unknown 32.4
2140 Male, age 76, both hemispheres 32.2
Pretectal area
nTPM: 32.4
2273 Male, age 74, both hemispheres 35.0
2667 Female, age 75, unknown 33.2
2224 Female, age 72, unknown 33.1
1816 Male, age 51, unknown 32.6
2407 Male, age 75, both hemispheres 32.6
1815 Male, age 53, unknown 32.4
1944 Female, age 72, unknown 31.6
2316 Male, age 76, right hemisphere 31.6
2825 Male, age 18, unknown 31.6
1817 Female, age 42, unknown 31.4
2007 Male, age 72, unknown 31.3
Red nucleus
nTPM: 32.2
2785 Male, age 18, unknown 33.6
1865 Male, age 51, unknown 32.9
1904 Male, age 53, unknown 32.9
2503 Female, age 72, unknown 32.8
1954 Female, age 42, unknown 32.7
1821 Female, age 72, unknown 32.5
2227 Male, age 72, unknown 32.1
2769 Male, age 72, unknown 32.1
2725 Female, age 75, unknown 31.9
2823 Male, age 76, right hemisphere 31.7
2584 Male, age 75, left hemisphere 31.1
2588 Male, age 74, left hemisphere 30.7
Substantia nigra
nTPM: 31.7
2409 Female, age 72, unknown 33.9
1889 Female, age 72, unknown 32.1
2590 Female, age 75, unknown 31.9
2699 Male, age 18, unknown 31.9
1851 Male, age 51, unknown 31.6
2241 Male, age 72, unknown 31.5
2583 Male, age 75, right hemisphere 31.1
2665 Male, age 74, both hemispheres 31.1
1941 Male, age 53, unknown 31.0
1916 Female, age 42, unknown 30.6
Superior colliculus
nTPM: 32.4
1913 Female, age 42, unknown 33.4
1796 Male, age 53, unknown 33.0
1995 Male, age 72, unknown 33.0
2087 Female, age 72, unknown 32.8
2664 Male, age 75, both hemispheres 32.7
2587 Male, age 74, left hemisphere 32.5
1839 Male, age 51, unknown 32.1
2261 Male, age 18, unknown 32.0
2668 Female, age 75, unknown 31.6
1895 Male, age 76, right hemisphere 30.4
Ventral tegmental area
nTPM: 32.7
2021 Male, age 53, unknown 33.6
1915 Female, age 42, unknown 33.4
2218 Male, age 76, both hemispheres 32.7
2410 Female, age 72, unknown 32.7
2223 Female, age 72, unknown 32.3
1942 Male, age 51, unknown 31.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.2
Samples: 139

Max nTPM: 41.7
Min nTPM: 5.6
Std nTPM: 6.0
Median nTPM: 14.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 41.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 34.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 26.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 26.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 26.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 26.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 26.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 25.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 24.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 23.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.3
FF:10158-103A5 76 years, female 17.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.2
Pig sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 16.8
Min nTPM: 4.3
Sample A Female 16.8
Sample B Female 6.6
Sample C Male 5.1
Sample D Male 4.3
Periaqueductal gray
nTPM: 5.8
Samples: 3

Max nTPM: 6.2
Min nTPM: 5.0
Sample B Female 6.2
Sample C Male 6.1
Sample D Male 5.0
Substantia nigra
nTPM: 7.4
Samples: 4

Max nTPM: 8.7
Min nTPM: 5.6
Sample A Female 8.6
Sample B Female 5.6
Sample C Male 6.6
Sample D Male 8.7
Superior colliculi
nTPM: 6.5
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.1
Sample A Female 7.7
Sample B Female 5.1
Sample C Male 6.6
Sample D Male 6.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.3
Sample A Male 9.7
Sample B Male 7.3
Sample C Female 7.9
Sample D Female 9.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68302323 Antisense, RP_041130_02_F05, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.