ABOUTMENU
HELP
NEWS
NAXD
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:43.7 nTPM
HPA:43.7 nTPM
GTEx:26.1 nTPM
FANTOM5:38.1 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:56.3 nTPM
Allen mouse:8.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA010551
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.9
2481 Female, age 94, left hemisphere 44.7
1781 Male, age 74, unknown 42.7
2290 Female, age 72, unknown 42.5
1857 Female, age 85, left hemisphere 42.0
2288 Male, age 75, left hemisphere 41.8
1854 Male, age 80, left hemisphere 41.2
2289 Male, age 61, right hemisphere 40.4
2846 Female, age 79, unknown 40.2
Claustrum
nTPM: 41.2
2198 Male, age 80, both hemispheres 43.2
2645 Female, age 72, unknown 43.1
2491 Male, age 75, both hemispheres 42.3
2284 Female, age 91, both hemispheres 41.9
2568 Male, age 61, both hemispheres 41.4
1956 Male, age 74, unknown 40.0
2392 Female, age 94, both hemispheres 39.8
2292 Female, age 85, both hemispheres 39.7
2196 Female, age 79, unknown 39.2
Globus pallidus, externus
nTPM: 43.0
2395 Male, age 75, both hemispheres 43.9
2772 Female, age 79, unknown 43.6
2567 Female, age 72, unknown 42.8
2646 Male, age 61, right hemisphere 42.7
1996 Male, age 80, right hemisphere 41.8
Globus pallidus, internus
nTPM: 42.9
2483 Female, age 94, right hemisphere 45.1
2287 Male, age 75, right hemisphere 44.4
2778 Female, age 91, both hemispheres 43.8
1818 Male, age 74, unknown 42.0
2037 Male, age 80, right hemisphere 41.8
2111 Female, age 85, right hemisphere 41.8
2566 Female, age 72, unknown 41.5
Nucleus accumbens
nTPM: 42.3
1783 Male, age 74, unknown 44.2
1806 Female, age 85, left hemisphere 43.0
2824 Male, age 61, right hemisphere 43.0
1856 Female, age 91, right hemisphere 42.4
2391 Female, age 94, left hemisphere 42.1
2698 Female, age 72, unknown 41.7
2286 Male, age 75, left hemisphere 41.6
2732 Male, age 80, right hemisphere 40.4
Nucleus basalis of Meynert
nTPM: 42.0
2569 Male, age 61, both hemispheres 43.9
2484 Female, age 94, left hemisphere 42.8
2821 Male, age 75, both hemispheres 40.8
2393 Male, age 80, right hemisphere 40.4
Nucleus of the diagonal band
nTPM: 43.7
2029 Male, age 61, right hemisphere 45.0
2775 Male, age 80, right hemisphere 44.6
1812 Female, age 91, both hemispheres 44.0
2195 Female, age 85, both hemispheres 42.6
1979 Male, age 74, unknown 42.2
Olfactory tubercle
nTPM: 43.1
1998 Female, age 91, both hemispheres 45.2
1846 Male, age 80, right hemisphere 43.1
2856 Male, age 75, right hemisphere 42.5
2487 Female, age 94, left hemisphere 41.5
Putamen
nTPM: 43.1
2647 Male, age 75, left hemisphere 45.3
1838 Male, age 80, right hemisphere 45.2
2489 Female, age 72, unknown 43.4
2466 Female, age 79, unknown 43.3
2482 Female, age 94, left hemisphere 42.3
1937 Female, age 91, right hemisphere 41.6
1829 Male, age 74, unknown 40.7
Septal nuclei
nTPM: 41.8
2059 Female, age 85, both hemispheres 44.5
1960 Male, age 74, unknown 43.5
2031 Female, age 72, unknown 43.1
2009 Female, age 91, both hemispheres 41.6
2199 Male, age 80, right hemisphere 40.8
2394 Male, age 61, left hemisphere 39.5
2629 Female, age 94, right hemisphere 39.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.9
Samples: 246

Max nTPM: 48.6
Min nTPM: 9.0
Std nTPM: 6.6
Median nTPM: 21.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 48.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 43.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 42.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 42.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 41.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 38.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 38.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 37.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 37.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 37.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 36.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.1
Samples: 246

Max nTPM: 56.6
Min nTPM: 8.8
Std nTPM: 9.1
Median nTPM: 22.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 56.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 51.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 49.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 48.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 46.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 46.8
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 45.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 45.2
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 44.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 44.5
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 43.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 26.1
Samples: 205

Max nTPM: 65.4
Min nTPM: 8.3
Std nTPM: 8.2
Median nTPM: 25.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 65.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 54.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 43.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 42.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 42.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 41.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 41.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 40.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 39.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 39.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 39.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 33.4
FF:10164-103B2 76 years, female 33.4
Globus pallidus
Scaled Tags Per Million: 33.1
FF:10175-103C4 60 years, female 38.6
FF:10161-103A8 76 years, female 27.6
Nucleus accumbens
Scaled Tags Per Million: 30.2
FF:10037-101F1 23-56 years, mixed 30.2
Putamen
Scaled Tags Per Million: 38.1
FF:10176-103C5 60 years, female 38.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Caudate
nTPM: 13.2
Samples: 4

Max nTPM: 14.4
Min nTPM: 12.1
Sample A Female 12.5
Sample B Female 13.8
Sample C Male 14.4
Sample D Male 12.1
Putamen
nTPM: 13.8
Samples: 4

Max nTPM: 15.9
Min nTPM: 10.3
Sample A Female 13.3
Sample B Female 10.3
Sample C Male 15.5
Sample D Male 15.9
Septum
nTPM: 15.8
Samples: 4

Max nTPM: 17.1
Min nTPM: 14.1
Sample A Female 17.1
Sample B Female 14.1
Sample C Male 16.4
Sample D Male 15.4
Ventral pallidum
nTPM: 14.9
Samples: 4

Max nTPM: 18.7
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 13.2
Sample C Male 18.7
Sample D Male 14.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 56.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.1
Samples: 4

Max nTPM: 54.3
Min nTPM: 45.5
Sample A Male 51.2
Sample B Male 54.3
Sample C Female 49.3
Sample D Female 45.5
Septum
nTPM: 51.6
Samples: 4

Max nTPM: 54.4
Min nTPM: 48.5
Sample A Male 48.5
Sample B Male 54.4
Sample C Female 50.5
Sample D Female 53.1
Ventral forebrain
nTPM: 56.3
Samples: 4

Max nTPM: 62.7
Min nTPM: 50.7
Sample A Male 62.7
Sample B Male 50.7
Sample C Female 58.6
Sample D Female 53.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.5
69080067 Antisense, RP_050324_01_H06, Mouse strain C57BL/6J (56 days, male) 8.5
Pallidum
Expression energy: 7.3
69080067 Antisense, RP_050324_01_H06, Mouse strain C57BL/6J (56 days, male) 7.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.