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REPIN1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.7 nTPM
HPA:46.7 nTPM
GTEx:42.1 nTPM
FANTOM5:56.6 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:10.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.4
2586 Male, age 75, left hemisphere 52.9
2828 Female, age 72, unknown 48.9
2019 Male, age 18, unknown 46.0
2666 Male, age 74, left hemisphere 45.8
1833 Male, age 53, unknown 41.3
1827 Male, age 72, unknown 40.7
1870 Female, age 42, unknown 40.6
1830 Male, age 51, unknown 40.5
2411 Female, age 72, unknown 39.0
2219 Male, age 76, both hemispheres 38.6
Dorsal raphe nucleus
nTPM: 40.7
1828 Male, age 53, unknown 42.1
2016 Female, age 72, unknown 41.1
2298 Female, age 72, unknown 41.0
2047 Male, age 72, unknown 39.8
2750 Male, age 76, both hemispheres 39.3
Inferior colliculus
nTPM: 42.1
1848 Female, age 42, unknown 43.3
1890 Male, age 53, unknown 42.4
2097 Female, age 72, unknown 41.7
2849 Male, age 72, unknown 40.8
Median raphe nucleus
nTPM: 36.5
2220 Male, age 76, midline 36.5
Pedunculopontine tegmental nucleus
nTPM: 37.5
2334 Male, age 80, both hemispheres 40.7
1921 Female, age 85, both hemispheres 38.6
2338 Male, age 61, both hemispheres 33.4
Periaquaductal grey, anterior
nTPM: 45.2
2502 Female, age 75, unknown 50.0
1795 Male, age 51, unknown 45.1
1947 Male, age 18, unknown 40.6
Periaquaductal grey, dorsal
nTPM: 38.3
2464 Female, age 72, unknown 41.3
1831 Male, age 72, unknown 38.4
1840 Male, age 53, unknown 37.9
2850 Male, age 76, both hemispheres 35.6
Periaquaductal grey, lateral
nTPM: 39.9
2272 Male, age 74, both hemispheres 44.1
2053 Male, age 18, unknown 38.1
2140 Male, age 76, both hemispheres 37.6
Pretectal area
nTPM: 41.8
2007 Male, age 72, unknown 47.7
1944 Female, age 72, unknown 45.7
1817 Female, age 42, unknown 45.3
1816 Male, age 51, unknown 43.6
2667 Female, age 75, unknown 42.9
1815 Male, age 53, unknown 41.3
2316 Male, age 76, right hemisphere 40.2
2224 Female, age 72, unknown 38.5
2273 Male, age 74, both hemispheres 38.5
2825 Male, age 18, unknown 38.5
2407 Male, age 75, both hemispheres 37.8
Red nucleus
nTPM: 46.7
2769 Male, age 72, unknown 51.4
2785 Male, age 18, unknown 51.3
2503 Female, age 72, unknown 50.6
2588 Male, age 74, left hemisphere 49.5
2227 Male, age 72, unknown 48.4
1904 Male, age 53, unknown 46.7
1954 Female, age 42, unknown 45.6
2584 Male, age 75, left hemisphere 45.2
1865 Male, age 51, unknown 44.4
2823 Male, age 76, right hemisphere 44.0
2725 Female, age 75, unknown 42.3
1821 Female, age 72, unknown 40.5
Substantia nigra
nTPM: 38.2
2665 Male, age 74, both hemispheres 44.6
2583 Male, age 75, right hemisphere 42.9
1889 Female, age 72, unknown 42.4
1916 Female, age 42, unknown 40.4
1851 Male, age 51, unknown 39.0
2699 Male, age 18, unknown 38.6
1941 Male, age 53, unknown 37.9
2590 Female, age 75, unknown 36.3
2241 Male, age 72, unknown 30.5
2409 Female, age 72, unknown 29.1
Superior colliculus
nTPM: 43.7
2664 Male, age 75, both hemispheres 47.6
2087 Female, age 72, unknown 47.4
1995 Male, age 72, unknown 46.2
2261 Male, age 18, unknown 45.8
1796 Male, age 53, unknown 44.9
2668 Female, age 75, unknown 43.8
1839 Male, age 51, unknown 42.5
1913 Female, age 42, unknown 42.3
2587 Male, age 74, left hemisphere 38.9
1895 Male, age 76, right hemisphere 38.0
Ventral tegmental area
nTPM: 40.1
1942 Male, age 51, unknown 42.4
2410 Female, age 72, unknown 41.9
2218 Male, age 76, both hemispheres 40.6
2021 Male, age 53, unknown 39.5
1915 Female, age 42, unknown 38.9
2223 Female, age 72, unknown 37.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.1
Samples: 139

Max nTPM: 65.2
Min nTPM: 25.3
Std nTPM: 6.8
Median nTPM: 41.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 65.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 62.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 59.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 57.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 56.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 55.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 55.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 54.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 53.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 52.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 52.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.6
FF:10158-103A5 76 years, female 56.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.0
Pig sample Sample description nTPM
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 19.3
Min nTPM: 11.6
Sample A Female 19.3
Sample B Female 11.6
Sample C Male 18.8
Sample D Male 12.9
Periaqueductal gray
nTPM: 13.7
Samples: 3

Max nTPM: 15.4
Min nTPM: 12.5
Sample B Female 13.3
Sample C Male 15.4
Sample D Male 12.5
Substantia nigra
nTPM: 13.8
Samples: 4

Max nTPM: 16.0
Min nTPM: 12.2
Sample A Female 16.0
Sample B Female 13.6
Sample C Male 13.3
Sample D Male 12.2
Superior colliculi
nTPM: 17.0
Samples: 4

Max nTPM: 18.6
Min nTPM: 15.8
Sample A Female 18.6
Sample B Female 16.9
Sample C Male 16.5
Sample D Male 15.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 12.0
Min nTPM: 9.6
Sample A Male 12.0
Sample B Male 9.6
Sample C Female 10.5
Sample D Female 10.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.